########################################
# Program: needle
# Rundate: Wed 30 May 2018 14:52:58
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_85/gb_CAG39357_ARO_3003901_Staphylococcus_1pw4_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_CAG39357_ARO_3003901_Staphylococcus_1pw4_A/gb_CAG39357_ARO_3003901_Staphylococcus_aureus_GlpT_with_mutation_conferring_resistance_to_fosfomycin__Staphylococcus_aureus_subsp._aureus_MRSA252.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_CAG39357_ARO_3003901_Staphylococcus_1pw4_A/1pw4_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_85/gb_CAG39357_ARO_3003901_Staphylococcus_1pw4_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_CAG39357_ARO_3003901_Staphylococcus_aureus_GlpT_with_mutation_conferring_resistance_to_fosfomycin__Staphylococcus_aureus_subsp._aureus_MRSA252
# 2: 1pw4_A_mol_protein_length_451__Glycerol-3-phosphate_transporter
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 460
# Identity:     254/460 (55.2%)
# Similarity:   317/460 (68.9%)
# Gaps:          34/460 ( 7.4%)
# Score: 1355.0
# 
#
#=======================================

gb_CAG39357_A      1 MNFLKPAKHIKPLPENQIDDTYKRLRLQVFLGIFIGYAGYYLLRKNFSLA     50
                        .|||.|...||..:||.||:|||.|:|||||.|||.|||:||||:||
1pw4_A_mol_pr      1 ---FKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALA     47

gb_CAG39357_A     51 MPALQEQGFTKAELGFALSAVSIAYGFSKFFMGTVSDRSNARIFLVLGLV    100
                     ||.|.||||::.:||||||.:|||||||||.||:||||||.|:||..||:
1pw4_A_mol_pr     48 MPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI     97

gb_CAG39357_A    101 LTAIVNLLMGFVPFFTSGIGIMFVLLFLNGWFQGMGWPPSGRVLVHWFSV    150
                     |.|.|.|.|||||:.||.|.:|||||||.||||||||||.||.:|||:|.
1pw4_A_mol_pr     98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ    147

gb_CAG39357_A    151 SERGSKTALWNVAHNVGGGIMAPIAAWGITTTAFINFGYLKGFEGVFIYP    200
                     .|||...::||.||||||||...:...|:        .:...:......|
1pw4_A_mol_pr    148 KERGGIVSVWNCAHNVGGGIPPLLFLLGM--------AWFNDWHAALYMP    189

gb_CAG39357_A    201 ALLALIIAAISYILIRDTPQSQGLPPIEIYKNDFATSDKKTLETELTTKE    250
                     |..|:::|..::.::||||||.||||||.||||             |.|:
1pw4_A_mol_pr    190 AFCAILVALFAFAMMRDTPQSCGLPPIEEYKND-------------TAKQ    226

gb_CAG39357_A    251 ILFKYVLNNKWVWAIAFANIFVYFVRYGVLDWAPVYLSEEKHFDLKASGW    300
                     |..:|||.||.:|.||.||:|||.:|||:|||:|.||.|.|||.|..|.|
1pw4_A_mol_pr    227 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSW    276

gb_CAG39357_A    301 AYFLYEWAGIPGTLLCGYISDKLFKGRRGPAGFFFMLGVTVFVLIYWLNP    350
                     ||||||:||||||||||::|||:|:|.||..|.|||..||:..::||:||
1pw4_A_mol_pr    277 AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP    326

gb_CAG39357_A    351 PGNAWLDNVSLIAIGFLIYGPVMLIGLQALDYVPKKAAGTAAGLTGLFGY    400
                     .||..:|.:.:|.||||||||||||||.||:..||||||||||.||||||
1pw4_A_mol_pr    327 AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY    376

gb_CAG39357_A    401 LFGAVMANIVLGAVVDKFGWDVGFILLTAISVFAMLSFILTWNKVGQETV    450
                     |.|:|.|:.::|..||.||||.||:::...|:.|::..|:.  .:|::..
1pw4_A_mol_pr    377 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV--MIGEKRR    424

gb_CAG39357_A    451 HH--------    452
                     |.        
1pw4_A_mol_pr    425 HEQLLQELVP    434


#---------------------------------------
#---------------------------------------