######################################## # Program: needle # Rundate: Wed 30 May 2018 12:43:41 # Commandline: needle # -outfile /Users/teresatavella/Documents/models_new/seqid60_low90/gb_CAG39047_ARO_3003794_Staphylococcus_5is1_A/needle.txt # -asequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_CAG39047_ARO_3003794_Staphylococcus_5is1_A/gb_CAG39047_ARO_3003794_Staphylococcus_aureus_walK_with_mutation_conferring_daptomycin_resistance__Staphylococcus_aureus_subsp._aureus_MRSA252.fa # -bsequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_CAG39047_ARO_3003794_Staphylococcus_5is1_A/5is1_A.fa # -gapopen 10 # -gapextend 0.5 # Align_format: srspair # Report_file: /Users/teresatavella/Documents/models_new/seqid60_low90/gb_CAG39047_ARO_3003794_Staphylococcus_5is1_A/needle.txt ######################################## #======================================= # # Aligned_sequences: 2 # 1: gb_CAG39047_ARO_3003794_Staphylococcus_aureus_walK_with_mutation_conferring_daptomycin_resistance__Staphylococcus_aureus_subsp._aureus_MRSA252 # 2: 5is1_A_mol_protein_length_152__Histidine_kinase # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 608 # Identity: 142/608 (23.4%) # Similarity: 142/608 (23.4%) # Gaps: 466/608 (76.6%) # Score: 707.0 # # #======================================= gb_CAG39047_A 1 MKWLKQLQSLHTKLVIVYVLLIIIGMQIIGLYFTNNLEKELLDNFKKNIT 50 |||||||||||||||| 5is1_A_mol_pr 1 ----------------------------------NNLEKELLDNFKKNIT 16 gb_CAG39047_A 51 QYAKQLEISIEKVYDEKGSVNAQKDIQNLLSEYANRQEIGEIRFIDKDQI 100 ||||||||||||||||||| |||||||||||||||||||||||||||||| 5is1_A_mol_pr 17 QYAKQLEISIEKVYDEKGS-NAQKDIQNLLSEYANRQEIGEIRFIDKDQI 65 gb_CAG39047_A 101 IIATTKQSNRSLINQKANDSSVQKALSLGQSNDHLILKDYGGGKDRVWVY 150 |||||||||||||||||||||||||||||||||||||||||||||||||| 5is1_A_mol_pr 66 IIATTKQSNRSLINQKANDSSVQKALSLGQSNDHLILKDYGGGKDRVWVY 115 gb_CAG39047_A 151 NIPVKVDKKVIGNIYIESKINDVYNQLNNINQIFIVGTAISLLITVILGF 200 ||||||||||||||||||||||||||| 5is1_A_mol_pr 116 NIPVKVDKKVIGNIYIESKINDVYNQL----------------------- 142 gb_CAG39047_A 201 FIARTITKPITDMRNQTVEMSRGNYTQRVKIYGNDEIGELALAFNNLSKR 250 5is1_A_mol_pr 142 -------------------------------------------------- 142 gb_CAG39047_A 251 VQEAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALKMLGMAK 300 5is1_A_mol_pr 142 -------------------------------------------------- 142 gb_CAG39047_A 301 EDIIGYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIARVNFSTIV 350 5is1_A_mol_pr 142 -------------------------------------------------- 142 gb_CAG39047_A 351 QETGFVTGYIAVLHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEA 400 5is1_A_mol_pr 142 -------------------------------------------------- 142 gb_CAG39047_A 401 LEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQINKEI 450 5is1_A_mol_pr 142 -------------------------------------------------- 142 gb_CAG39047_A 451 IDFNMFINKIINRHEMSTKDTTFIRDIPKKTIFTEFDPDKMTQVFDNVIT 500 5is1_A_mol_pr 142 -------------------------------------------------- 142 gb_CAG39047_A 501 NAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYR 550 5is1_A_mol_pr 142 -------------------------------------------------- 142 gb_CAG39047_A 551 VDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEV 600 5is1_A_mol_pr 142 -------------------------------------------------- 142 gb_CAG39047_A 601 IEDGDWDE 608 5is1_A_mol_pr 142 -------- 142 #--------------------------------------- #---------------------------------------