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# Program: needle
# Rundate: Wed 30 May 2018 12:18:40
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_CAD09823.1_ARO_3003479_tetR_3zqi_B/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_CAD09823.1_ARO_3003479_tetR_3zqi_B/gb_CAD09823.1_ARO_3003479_tetR__Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_CAD09823.1_ARO_3003479_tetR_3zqi_B/3zqi_B.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_CAD09823.1_ARO_3003479_tetR_3zqi_B/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_CAD09823.1_ARO_3003479_tetR__Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18
# 2: 3zqi_B_mol_protein_length_208__TETRACYCLINE_REPRESSOR_PROTEIN_CLASS_B_FROM_TRANSPOSON_TN10,_TETRACYCLINE_REPRESSOR_PROTEIN_CLASS_D
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 208
# Identity:     188/208 (90.4%)
# Similarity:   189/208 (90.9%)
# Gaps:           7/208 ( 3.4%)
# Score: 950.0
# 
#
#=======================================

gb_CAD09823.1      1 MMSRLDKSKVINSALELLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNKR     50
                         ||||||||||||||||||||||||||||||||||||||||||||||
3zqi_B_mol_pr      1 ----LDKSKVINSALELLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNKR     46

gb_CAD09823.1     51 ALLDALAIEMLDRHHTHFCPLEGESWQDFLRNNAKSFRCALLSHRDGAKV    100
                     ||||||||||||||||||.|||||||||||||||||||.|||||||||||
3zqi_B_mol_pr     47 ALLDALAIEMLDRHHTHFSPLEGESWQDFLRNNAKSFRNALLSHRDGAKV     96

gb_CAD09823.1    101 HLGTRPTEKQYETLENQLAFLCQQGFSLENALYALSAVGHFTLGCVLEDQ    150
                     |||||||||||||||||||||.||||||||||||||||||||||.|||||
3zqi_B_mol_pr     97 HLGTRPTEKQYETLENQLAFLTQQGFSLENALYALSAVGHFTLGSVLEDQ    146

gb_CAD09823.1    151 EHQVAKEERETPTTDSMPPLLRQAIELFDHQGAEPAFLFGLELIICGLEK    200
                     ||||||||||||||||||||||||||||||||||||||.|||.:|.|.|.
3zqi_B_mol_pr    147 EHQVAKEERETPTTDSMPPLLRQAIELFDHQGAEPAFLHGLESLIRGFEV    196

gb_CAD09823.1    201 QLKCESGS    208
                     ||...   
3zqi_B_mol_pr    197 QLTAL---    201


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