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# Program: needle
# Rundate: Wed 30 May 2018 12:01:26
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_CAC35723.1_ARO_3003374_Enterobacter_3lhq_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_CAC35723.1_ARO_3003374_Enterobacter_3lhq_A/gb_CAC35723.1_ARO_3003374_Enterobacter_aerogenes_acrR_with_mutation_conferring_multidrug_antibiotic_resistance__Enterobacter_aerogenes.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_CAC35723.1_ARO_3003374_Enterobacter_3lhq_A/3lhq_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_CAC35723.1_ARO_3003374_Enterobacter_3lhq_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_CAC35723.1_ARO_3003374_Enterobacter_aerogenes_acrR_with_mutation_conferring_multidrug_antibiotic_resistance__Enterobacter_aerogenes
# 2: 3lhq_A_mol_protein_length_220__AcrAB_operon_repressor_(TetR/AcrR_family)
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 217
# Identity:     173/217 (79.7%)
# Similarity:   193/217 (88.9%)
# Gaps:           7/217 ( 3.2%)
# Score: 885.0
# 
#
#=======================================

gb_CAC35723.1      1 -MARKTKQQALETRQLILDVALRLFSQQGVSSTSLAAIAKAAGVTRGAIY     49
                      ||||||||||||||.|||||||||||||||:||||.||.||||||||||
3lhq_A_mol_pr      1 AMARKTKQQALETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIY     50

gb_CAC35723.1     50 WHFKNKSDLFNEIWSLSDASISDLEVEYRAKFPNDPLSVVREILVYILEA     99
                     ||||||||||:|||.||:::|.:||:||:||||:|||||:|||||:||||
3lhq_A_mol_pr     51 WHFKNKSDLFSEIWELSESNIGELEIEYQAKFPDDPLSVLREILVHILEA    100

gb_CAC35723.1    100 TVVEERRRLMMEIIFHKCEFVGEMAVVQQAQRSLWLESYDRIEQTLKDCI    149
                     ||.||||||:||||||||||||||.|||||||||.||||||||||||.||
3lhq_A_mol_pr    101 TVTEERRRLLMEIIFHKCEFVGEMVVVQQAQRSLCLESYDRIEQTLKHCI    150

gb_CAC35723.1    150 TAQQLPANLLTRRAAILMRSYLSGLMENWLFAPESFNLHAEARAYVDALI    199
                     .|:.||.|||||||||||||::|||||||||||:||:|..||||||..|:
3lhq_A_mol_pr    151 NAKMLPENLLTRRAAILMRSFISGLMENWLFAPQSFDLKKEARAYVTILL    200

gb_CAC35723.1    200 EMYQTCPSLRSSSEVMA    216
                     ||||.||:||:      
3lhq_A_mol_pr    201 EMYQLCPTLRA------    211


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