########################################
# Program: needle
# Rundate: Wed 30 May 2018 12:19:36
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_CAC30845.1_ARO_3003284_Mycobacterium_5tw1_C/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_CAC30845.1_ARO_3003284_Mycobacterium_5tw1_C/gb_CAC30845.1_ARO_3003284_Mycobacterium_leprae_rpoB_mutations_conferring_resistance_to_rifampicin__Mycobacterium_leprae_TN.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_CAC30845.1_ARO_3003284_Mycobacterium_5tw1_C/5tw1_C.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_CAC30845.1_ARO_3003284_Mycobacterium_5tw1_C/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_CAC30845.1_ARO_3003284_Mycobacterium_leprae_rpoB_mutations_conferring_resistance_to_rifampicin__Mycobacterium_leprae_TN
# 2: 5tw1_C_mol_protein_length_1169__DNA-directed_RNA_polymerase_subunit_beta
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1178
# Identity:    1021/1178 (86.7%)
# Similarity:  1055/1178 (89.6%)
# Gaps:          79/1178 ( 6.7%)
# Score: 5254.0
# 
#
#=======================================

gb_CAC30845.1      1 MLEGCILPDFGQSKTDVSPSQSRPQSSPNNSVPGAPNRISFAKLREPLEV     50
                                                  |||||||||:|||||||||||
5tw1_C_mol_pr      1 -----------------------------NSVPGAPNRVSFAKLREPLEV     21

gb_CAC30845.1     51 PGLLDVQTDSFEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFS    100
                     ||||||||||||||:||..||.||..||:..|||||||||.|||||||||
5tw1_C_mol_pr     22 PGLLDVQTDSFEWLVGSDRWRQAAIDRGEENPVGGLEEVLAELSPIEDFS     71

gb_CAC30845.1    101 GSMSLSFSDPRFDEVKAPVEECKDKDMTYAAPLFVTAEFINNNTGEIKSQ    150
                     |||||||||||||||||.|:||||||||||||||||||||||||||||||
5tw1_C_mol_pr     72 GSMSLSFSDPRFDEVKASVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQ    121

gb_CAC30845.1    151 TVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLH    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
5tw1_C_mol_pr    122 TVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLH    171

gb_CAC30845.1    201 SVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITE    250
                     ||||||.|||||||         |||||||||||||||||||||:|||.|
5tw1_C_mol_pr    172 SVKVIPGRGAWLEF---------VRIDRKRRQPVTVLLKALGWTNEQIVE    212

gb_CAC30845.1    251 RFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF    300
                     ||||||||..|||||.|.||||||||||||||||||||||||||||||||
5tw1_C_mol_pr    213 RFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLF    262

gb_CAC30845.1    301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHE    350
                     ||||||||||||||||||||           |||||||||||||||||||
5tw1_C_mol_pr    263 FKEKRYDLARVGRYKVNKKL-----------TLTEEDVVATIEYLVRLHE    301

gb_CAC30845.1    351 GQSTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVV    400
                     ||::||||||||||||.|||||||||||||||||||||||||:|||||||
5tw1_C_mol_pr    302 GQTSMTVPGGVEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVV    351

gb_CAC30845.1    401 RERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLT    450
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
5tw1_C_mol_pr    352 RERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLT    401

gb_CAC30845.1    451 HKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSL    500
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
5tw1_C_mol_pr    402 HKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSL    451

gb_CAC30845.1    501 SVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPIDE    550
                     |||||||||||||||||||.:|||:|:|:||||||||||||||||||.||
5tw1_C_mol_pr    452 SVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPTDE    501

gb_CAC30845.1    551 AGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD    600
                     .|||.|.||:||:|.||||:|::.:|||||||||||||||||||||||||
5tw1_C_mol_pr    502 NGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHD    551

gb_CAC30845.1    601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVI    650
                     |||||||||||||||||||||||||||||||||||||||.||||:|:|||
5tw1_C_mol_pr    552 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKTGVI    601

gb_CAC30845.1    651 EEVSADYITVMADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQ    700
                     |||||||||||||||||::||:||||||||||||||.||||||.||||||
5tw1_C_mol_pr    602 EEVSADYITVMADDGTRQSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQ    651

gb_CAC30845.1    701 VIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSI    750
                     ||||||||:|||||||||||||||||||||||||||||||||||||||||
5tw1_C_mol_pr    652 VIADGPCTQNGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSI    701

gb_CAC30845.1    751 HIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGD    800
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
5tw1_C_mol_pr    702 HIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGD    751

gb_CAC30845.1    801 ILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGI    850
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
5tw1_C_mol_pr    752 ILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGI    801

gb_CAC30845.1    851 RVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP    900
                     ||||.|||||||||||||||||||||||||||||||||||||||||||||
5tw1_C_mol_pr    802 RVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP    851

gb_CAC30845.1    901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAG    950
                     .||||||||||||||||||||||||||:|||||||||||||:||.||||.
5tw1_C_mol_pr    852 VEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAA    901

gb_CAC30845.1    951 GIPDWAVNLPEELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDV   1000
                     |:||||..|||||..|..:..|:|||||||:|.||.|||.||||||||:|
5tw1_C_mol_pr    902 GVPDWASKLPEELYSAPADSTVATPVFDGAQEGELAGLLGSTLPNRDGEV    951

gb_CAC30845.1   1001 MVGGDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYS   1050
                     ||..|||:.|||||||||||||||||||||:|||||||||||||||||||
5tw1_C_mol_pr    952 MVDADGKSTLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYS   1001

gb_CAC30845.1   1051 MITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRV   1100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
5tw1_C_mol_pr   1002 MITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRV   1051

gb_CAC30845.1   1101 KVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREG   1150
                     ||||||||||||||||||||||||||||||||||||||||||||||:|  
5tw1_C_mol_pr   1052 KVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMR--   1099

gb_CAC30845.1   1151 EDEDLERAAANLGINLSRNESASIEDLA   1178
                                                 
5tw1_C_mol_pr   1099 ----------------------------   1099


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