######################################## # Program: needle # Rundate: Wed 30 May 2018 13:18:07 # Commandline: needle # -outfile /Users/teresatavella/Documents/models_new/seqid60_low90/gb_CAC29514.1_ARO_3003298_Mycobaterium_4g3n_A/needle.txt # -asequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_CAC29514.1_ARO_3003298_Mycobaterium_4g3n_A/gb_CAC29514.1_ARO_3003298_Mycobaterium_leprae_gyrA_conferring_resistance_to_fluoroquinolones__Mycobacterium_leprae_TN.fa # -bsequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_CAC29514.1_ARO_3003298_Mycobaterium_4g3n_A/4g3n_A.fa # -gapopen 10 # -gapextend 0.5 # Align_format: srspair # Report_file: /Users/teresatavella/Documents/models_new/seqid60_low90/gb_CAC29514.1_ARO_3003298_Mycobaterium_4g3n_A/needle.txt ######################################## #======================================= # # Aligned_sequences: 2 # 1: gb_CAC29514.1_ARO_3003298_Mycobaterium_leprae_gyrA_conferring_resistance_to_fluoroquinolones__Mycobacterium_leprae_TN # 2: 4g3n_A_mol_protein_length_327__DNA_gyrase_subunit_A # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 1249 # Identity: 280/1249 (22.4%) # Similarity: 291/1249 (23.3%) # Gaps: 947/1249 (75.8%) # Score: 1401.0 # # #======================================= gb_CAC29514.1 1 MTDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLK 50 4g3n_A_mol_pr 0 -------------------------------------------------- 0 gb_CAC29514.1 51 PVHRRVLYAMLDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRM 100 4g3n_A_mol_pr 0 -------------------------------------------------- 0 gb_CAC29514.1 101 AQPWSLRYPLVDGQGNFGSPGNDPPAAMRYCVSGNSLVRLLFGKSIRIGD 150 4g3n_A_mol_pr 0 -------------------------------------------------- 0 gb_CAC29514.1 151 IVTGAQFNSDNPIDLKVLDRHGNPVVADYLFHSGEHQTYTVRTTEGYEIT 200 4g3n_A_mol_pr 0 -------------------------------------------------- 0 gb_CAC29514.1 201 GTSNHPLLCLVNVGGIPTLLWKLIGEIRSGDYVVLQRIPPVEFGPADWYS 250 4g3n_A_mol_pr 0 -------------------------------------------------- 0 gb_CAC29514.1 251 TMEALLFGAFISGGFVFQDHAGFNSLDRDYFTMVVNAYDTVVGGLRCISS 300 4g3n_A_mol_pr 0 -------------------------------------------------- 0 gb_CAC29514.1 301 RITVSGSTLLELDVYNLIEFKKTRLSGLCGQRSADKLVPDWLWHSPSTVK 350 4g3n_A_mol_pr 0 -------------------------------------------------- 0 gb_CAC29514.1 351 RAFLQALFEGEGFSSILSRNIIEISYSTLSERLAADVQQMLLEFGVVSER 400 4g3n_A_mol_pr 0 -------------------------------------------------- 0 gb_CAC29514.1 401 YCHTVNEYKVVIANRAQVEMFFTQVGFGVTKQAKLIRDVVSMSPCVGMDI 450 4g3n_A_mol_pr 0 -------------------------------------------------- 0 gb_CAC29514.1 451 NCVPGLATFIRKHCDNRWVEEDSFNQHNVDCVQHWHHHSAEIVGHIADPD 500 4g3n_A_mol_pr 0 -------------------------------------------------- 0 gb_CAC29514.1 501 IRAIVTDLTDGRFYYARVASVTDTGIQPVFSLHVDTEDHSFLTNGFISHN 550 4g3n_A_mol_pr 0 -------------------------------------------------- 0 gb_CAC29514.1 551 TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSG 600 4g3n_A_mol_pr 0 -------------------------------------------------- 0 gb_CAC29514.1 601 GIAVGMATNIPPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFP 650 4g3n_A_mol_pr 0 -------------------------------------------------- 0 gb_CAC29514.1 651 TAGLIVGSQGIADAYKTGRGSIRIRGVVEVEEDSRGRTSLVITELPYQVN 700 4g3n_A_mol_pr 0 -------------------------------------------------- 0 gb_CAC29514.1 701 HDNFITSIAEQVRTGRLAGISNVEDQGSDRVGVRIVIEIKRDAVAKVVLN 750 4g3n_A_mol_pr 0 -------------------------------------------------- 0 gb_CAC29514.1 751 NLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMICYYVEHQLDVIVRRTTY 800 4g3n_A_mol_pr 0 -------------------------------------------------- 0 gb_CAC29514.1 801 RLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVELLDIDD 850 4g3n_A_mol_pr 0 -------------------------------------------------- 0 gb_CAC29514.1 851 IQAQAILDMQLRRLAALERQRIIDDLAKIEVEIADLGDILAKPERRRGII 900 4g3n_A_mol_pr 0 -------------------------------------------------- 0 gb_CAC29514.1 901 RNELTEIAEKYGDDRRTRIIAVDGDVNDEDLIAREEVVVTITETGYAKRT 950 |||:|||||||||||||| 4g3n_A_mol_pr 1 --------------------------------AREDVVVTITETGYAKRT 18 gb_CAC29514.1 951 KTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRA 1000 ||||||||| ||||||||||.|||||||||.||||||||||||| 4g3n_A_mol_pr 19 KTDLYRSQK-------GAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRA 61 gb_CAC29514.1 1001 KAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYEDAPYLVLATRA 1050 |||:||||||||||||||||||||||||||||||||.|.||||||||||. 4g3n_A_mol_pr 62 KAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRN 111 gb_CAC29514.1 1051 GLVKKSKLTDFDSNRSGGIVAINLRDNDELVGAVLCAADGDLLLVSANGQ 1100 |||||||||||||||||||||:||||||||||||||:|..|||||||||| 4g3n_A_mol_pr 112 GLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQ 161 gb_CAC29514.1 1101 SIRFSATDEALRPMGRATSGVQGMRFNADDRLLSLNVVREDTYLLVATSG 1150 |||||||||||||||||||||||||||.||||||||||||.||||||||| 4g3n_A_mol_pr 162 SIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSG 211 gb_CAC29514.1 1151 GYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGAIVVDEDSELYAITS 1200 ||||||:|||||:||||||||||||||||||.||||::||:||||||:|| 4g3n_A_mol_pr 212 GYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTS 261 gb_CAC29514.1 1201 GGGVIRTTARQVRQAGRQTKGVRLMNLGEGDTLLAIARNAEESADGGVG 1249 |||||||.|||||:||||||||||||||||||||||||||| 4g3n_A_mol_pr 262 GGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAE-------- 302 #--------------------------------------- #---------------------------------------