########################################
# Program: needle
# Rundate: Wed 30 May 2018 12:55:26
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_low90/gb_CAC29513.1_ARO_3003304_Mycobacterium_3zkd_F/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_CAC29513.1_ARO_3003304_Mycobacterium_3zkd_F/gb_CAC29513.1_ARO_3003304_Mycobacterium_leprae_gyrB_conferring_resistance_to_fluoroquinolone__Mycobacterium_leprae_TN.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_CAC29513.1_ARO_3003304_Mycobacterium_3zkd_F/3zkd_F.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_low90/gb_CAC29513.1_ARO_3003304_Mycobacterium_3zkd_F/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_CAC29513.1_ARO_3003304_Mycobacterium_leprae_gyrB_conferring_resistance_to_fluoroquinolone__Mycobacterium_leprae_TN
# 2: 3zkd_F_mol_protein_length_432__DNA_GYRASE_SUBUNIT_B
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 679
# Identity:     321/679 (47.3%)
# Similarity:   346/679 (51.0%)
# Gaps:         304/679 (44.8%)
# Score: 1643.0
# 
#
#=======================================

gb_CAC29513.1      1 MAAQRKAQDEYGAASITILEGLEAVRKRPGMYVGSTGERGLHHLIWEVVD     50
                             ||||||||||||||||||||||||:|||||||||||||||||
3zkd_F_mol_pr      1 --------DEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVD     42

gb_CAC29513.1     51 NSVDEAMAGYATQVDVRLFDDGSVEVADNGRGIPVAVHATGVPTVDVVMT    100
                     |:||||||||||.|:|.|.:||.|||||:|||||||.||:|:||||||||
3zkd_F_mol_pr     43 NAVDEAMAGYATTVNVVLLEDGGVEVADDGRGIPVATHASGIPTVDVVMT     92

gb_CAC29513.1    101 QLHAGGKFGGKDS-GYNVSGGLHGVGVSVVNALSTRVEVDIKRDGYEWSQ    149
                     ||||||||   || .|.:||||||||||||||||||:||:||||||||||
3zkd_F_mol_pr     93 QLHAGGKF---DSDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQ    139

gb_CAC29513.1    150 FYDKAVPGILKQGEATEATGTTIRFWADPDIFETTKYDFGTVARRIQEVA    199
                     .|:|:.|..||||..|:.||:|:||||||.:||||:|||.|||||:||:|
3zkd_F_mol_pr    140 VYEKSEPLGLKQGAPTKKTGSTVRFWADPAVFETTEYDFETVARRLQEMA    189

gb_CAC29513.1    200 FLNKGLTINLVDERVKQDEVVDDVVSDTAEAPVAMTVEEKSTESSAPHKV    249
                     ||||||||||.||||.                                ||
3zkd_F_mol_pr    190 FLNKGLTINLTDERVT--------------------------------KV    207

gb_CAC29513.1    250 RHRTFHYPGGLVDFVKHINRTKTPIQQSIIDFDGKGAGHEVEVAMQWNGG    299
                     :.||||||||||||||||||||..|..||:||.|||.|||||:|||||.|
3zkd_F_mol_pr    208 KSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAG    257

gb_CAC29513.1    300 YSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLT    349
                     ||||||||||||||||||||||||||||||||||||||:|      ||||
3zkd_F_mol_pr    258 YSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRK------PNLT    301

gb_CAC29513.1    350 GDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQRVCNEQLIHWF    399
                     |||||||||||||||||||||||||||||||||||||||:||||||.|||
3zkd_F_mol_pr    302 GDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWF    351

gb_CAC29513.1    400 EANPVDAKAVVNKAISSAQARIAARKARELVRRKSATDLGGLPGKLADCR    449
                     ||||.|||.|||||:||||||||||                         
3zkd_F_mol_pr    352 EANPTDAKVVVNKAVSSAQARIAAR-------------------------    376

gb_CAC29513.1    450 STDPRSSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRV    499
                                                                       
3zkd_F_mol_pr    376 --------------------------------------------------    376

gb_CAC29513.1    500 LKNTEVQAIITALGTGIHDEFDISRLRYHKIVLMADADVDGQHISTLLLT    549
                                                                       
3zkd_F_mol_pr    376 --------------------------------------------------    376

gb_CAC29513.1    550 LLFRFMRPLIEHGYVFLAQPPLYKLKWQRMDPEFAYSDSERDGLLETGLK    599
                                                                       
3zkd_F_mol_pr    376 --------------------------------------------------    376

gb_CAC29513.1    600 LGKKINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADE    649
                                                                       
3zkd_F_mol_pr    376 --------------------------------------------------    376

gb_CAC29513.1    650 LFSILMGEDVDARRSFITRNAKDVRFLDV    678
                                                  
3zkd_F_mol_pr    376 -----------------------------    376


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