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# Program: needle
# Rundate: Wed 30 May 2018 14:56:33
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_85/gb_CAB12062.1_ARO_3003028_lmrA_1sgm_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_CAB12062.1_ARO_3003028_lmrA_1sgm_A/gb_CAB12062.1_ARO_3003028_lmrA__Bacillus_subtilis_subsp._subtilis_str._168.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_CAB12062.1_ARO_3003028_lmrA_1sgm_A/1sgm_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_85/gb_CAB12062.1_ARO_3003028_lmrA_1sgm_A/needle.txt
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#=======================================
#
# Aligned_sequences: 2
# 1: gb_CAB12062.1_ARO_3003028_lmrA__Bacillus_subtilis_subsp._subtilis_str._168
# 2: 1sgm_A_mol_protein_length_191__Putative_HTH-type_transcriptional_regulator_yxaF
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 188
# Identity:     103/188 (54.8%)
# Similarity:   134/188 (71.3%)
# Gaps:           4/188 ( 2.1%)
# Score: 527.0
# 
#
#=======================================

gb_CAB12062.1      1 MSYGDSREKILSAATRLFQLQGYYGTGLNQIIKESGAPKGSLYYHFPGGK     50
                        ||||||||..|:||.|||||:.||||||:|||||||||||:.||.||
1sgm_A_mol_pr      1 ---GDSREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGK     47

gb_CAB12062.1     51 EQLAIEAVNEMKEYIRQKIADCMEACTDPAEGIQAFLKELSCQFSCTEDI    100
                     |:||||||....:.:...|...|:..:||.|.||.|:|:.:.||..||.|
1sgm_A_mol_pr     48 EELAIEAVTYTGKIVEHLIQQSMDESSDPVEAIQLFIKKTASQFDNTESI     97

gb_CAB12062.1    101 EGLPVGLLAAETSLKSEPLREACHEAYKEWASVYEEKLRQTGCSESRAKE    150
                     :|:||||||:||:|.|||||..|.:.:|.|.:|:..||.:.|.:|..|.:
1sgm_A_mol_pr     98 KGIPVGLLASETALISEPLRTVCMKVFKSWEAVFARKLMENGFAEEEANQ    147

gb_CAB12062.1    151 ASTVVNAMIEGGILLSLTAKNSTPLLHISSCIPDLLKR    188
                     ..|::|:||||||:||||.|:.||||.|:..||.|:: 
1sgm_A_mol_pr    148 LGTLINSMIEGGIMLSLTNKDKTPLLLIAEQIPVLVR-    184


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