########################################
# Program: needle
# Rundate: Wed 30 May 2018 12:46:27
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_low90/gb_CAA55486.1_ARO_3003459_Mycobacterium_3zkd_F/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_CAA55486.1_ARO_3003459_Mycobacterium_3zkd_F/gb_CAA55486.1_ARO_3003459_Mycobacterium_tuberculosis_gyrB_mutant_conferring_resistance_to_fluoroquinolone__Mycobacterium_tuberculosis_H37Ra.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_CAA55486.1_ARO_3003459_Mycobacterium_3zkd_F/3zkd_F.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_low90/gb_CAA55486.1_ARO_3003459_Mycobacterium_3zkd_F/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_CAA55486.1_ARO_3003459_Mycobacterium_tuberculosis_gyrB_mutant_conferring_resistance_to_fluoroquinolone__Mycobacterium_tuberculosis_H37Ra
# 2: 3zkd_F_mol_protein_length_432__DNA_GYRASE_SUBUNIT_B
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 714
# Identity:     376/714 (52.7%)
# Similarity:   376/714 (52.7%)
# Gaps:         338/714 (47.3%)
# Score: 1903.0
# 
#
#=======================================

gb_CAA55486.1      1 MGKNEARRSALAPDHGTVVCDPLRRLNRMHATPEESIRIVAAQKKKAQDE     50
                                                                     ||
3zkd_F_mol_pr      1 ------------------------------------------------DE      2

gb_CAA55486.1     51 YGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
3zkd_F_mol_pr      3 YGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY     52

gb_CAA55486.1    101 ATTVNVVLLEDGGVEVADDGRGIPVATHASGIPTVDVVMTQLHAGGKFDS    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
3zkd_F_mol_pr     53 ATTVNVVLLEDGGVEVADDGRGIPVATHASGIPTVDVVMTQLHAGGKFDS    102

gb_CAA55486.1    151 DAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGLKQG    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
3zkd_F_mol_pr    103 DAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGLKQG    152

gb_CAA55486.1    201 APTKKTGSTVRFWADPAVFETTEYDFETVARRLQEMAFLNKGLTINLTDE    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
3zkd_F_mol_pr    153 APTKKTGSTVRFWADPAVFETTEYDFETVARRLQEMAFLNKGLTINLTDE    202

gb_CAA55486.1    251 RVTQDEVVDEVVSDVAEAPKSASERAAESTAPHKVKSRTFHYPGGLVDFV    300
                     |||                              |||||||||||||||||
3zkd_F_mol_pr    203 RVT------------------------------KVKSRTFHYPGGLVDFV    222

gb_CAA55486.1    301 KHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSESVHTFANTINTH    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
3zkd_F_mol_pr    223 KHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSESVHTFANTINTH    272

gb_CAA55486.1    351 EGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVK    400
                     |||||||||||||||||||||||||      |||||||||||||||||||
3zkd_F_mol_pr    273 EGGTHEEGFRSALTSVVNKYAKDRK------PNLTGDDIREGLAAVISVK    316

gb_CAA55486.1    401 VSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAV    450
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
3zkd_F_mol_pr    317 VSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAV    366

gb_CAA55486.1    451 SSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGD    500
                     ||||||||||                                        
3zkd_F_mol_pr    367 SSAQARIAAR----------------------------------------    376

gb_CAA55486.1    501 SAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGT    550
                                                                       
3zkd_F_mol_pr    376 --------------------------------------------------    376

gb_CAA55486.1    551 GIHDEFDIGKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHV    600
                                                                       
3zkd_F_mol_pr    376 --------------------------------------------------    376

gb_CAA55486.1    601 FLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKEDGIQRYK    650
                                                                       
3zkd_F_mol_pr    376 --------------------------------------------------    376

gb_CAA55486.1    651 GLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRS    700
                                                                       
3zkd_F_mol_pr    376 --------------------------------------------------    376

gb_CAA55486.1    701 FITRNAKDVRFLDV    714
                                   
3zkd_F_mol_pr    376 --------------    376


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