########################################
# Program: needle
# Rundate: Wed 30 May 2018 11:30:39
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_BAA37152.1_ARO_3003702_Pseudomonas_1zvu_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_BAA37152.1_ARO_3003702_Pseudomonas_1zvu_A/gb_BAA37152.1_ARO_3003702_Pseudomonas_aeruginosa_gyrA_and_parC_conferring_resistance_to_fluoroquinolone__Pseudomonas_aeruginosa.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_BAA37152.1_ARO_3003702_Pseudomonas_1zvu_A/1zvu_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_BAA37152.1_ARO_3003702_Pseudomonas_1zvu_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_BAA37152.1_ARO_3003702_Pseudomonas_aeruginosa_gyrA_and_parC_conferring_resistance_to_fluoroquinolone__Pseudomonas_aeruginosa
# 2: 1zvu_A_mol_protein_length_716__Topoisomerase_IV_subunit_A
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 754
# Identity:     468/754 (62.1%)
# Similarity:   567/754 (75.2%)
# Gaps:          69/754 ( 9.2%)
# Score: 2402.5
# 
#
#=======================================

gb_BAA37152.1      1 MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQR     50
                                                       |||||.||||||||||
1zvu_A_mol_pr      1 ----------------------------------DRALPFIGDGLKPVQR     16

gb_BAA37152.1     51 RIVYAMSELGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPF    100
                     |||||||||||          |||||||||:|||||||||||||||||||
1zvu_A_mol_pr     17 RIVYAMSELGL----------RTVGDVLGKYHPHGDSACYEAMVLMAQPF     56

gb_BAA37152.1    101 SYRYPLVDGQGNWGAPDDPKSFAAMRYTEARLSRYSEVLLSELGQGTVDW    150
                     |||||||||||||||||||||||||||||:|||:|||:|||||||||.||
1zvu_A_mol_pr     57 SYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADW    106

gb_BAA37152.1    151 VPNFDGTLDEPAVLPARLPNLLLNGTTGIAVGMATDVPPHNLREVASACV    200
                     ||||||||.||.:|||||||:|||||||||||||||:|||||||||.|.:
1zvu_A_mol_pr    107 VPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI    156

gb_BAA37152.1    201 RLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYETGRGSVRMRA    250
                     .|:|||..|:.:|.:.|.|||:||||||||.||:::|:||.|||||||||
1zvu_A_mol_pr    157 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA    206

gb_BAA37152.1    251 VYRFEDGDIVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHEN    300
                     |::.|||.:||.||||||||::||||||.||:.||||||.||||||||||
1zvu_A_mol_pr    207 VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN    256

gb_BAA37152.1    301 PTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPAVKDL    350
                     |||:||:|||||||::::|.|||||||||.|||:|||:|||||:||||:|
1zvu_A_mol_pr    257 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNL    306

gb_BAA37152.1    351 RQLLSEWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHII    400
                     .::|||||.||..||||||.:||:||.:|||:|:|||:||||:||||.||
1zvu_A_mol_pr    307 LEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII    356

gb_BAA37152.1    401 RTEDQPKAVLMERFELSEVQADYILDTRLRQLARLEEMKIRGEQEELLKE    450
                     |.||:||..||.||.|:|.||:.||:.:||.||:||||||||||.||.||
1zvu_A_mol_pr    357 RNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKE    406

gb_BAA37152.1    451 QKRLQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVARAEARALSETE    500
                     :.:||.:|.||.|:..|:::||..||:.||||||||:..|.||:|:||.:
1zvu_A_mol_pr    407 RDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHD    456

gb_BAA37152.1    501 LMPTEPVTVVLSEKGWVRCAKGHDIDAAGLSYKAGDGFKAAAPGRSNQYA    550
                     ::|:||||:|||:.||||.||               |||||..|:|||..
1zvu_A_mol_pr    457 MLPSEPVTIVLSQMGWVRSAK---------------GFKAAVKGKSNQPV    491

gb_BAA37152.1    551 VFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGASFECVLLPDDDAL    600
                     ||:|||||||::...:|||||   |||:|:||.||||:.:.:|:..||..
1zvu_A_mol_pr    492 VFVDSTGRSYAIDPITLPSAR---EPLTGKLTLPPGATVDHMLMESDDQK    538

gb_BAA37152.1    601 FVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQDW    650
                     .::|||||||||....||.|:|:|||||::||..:.|:.|..:.|. .|.
1zvu_A_mol_pr    539 LLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDA-SDM    587

gb_BAA37152.1    651 LAAVTTEGRLLLFKVSDLPQLGKGKGNKIIGIPGERVASREEYLTDLAVL    700
                     |.|:|..||:|:|.|||||||.||||||||.||....|..|:.|..|.||
1zvu_A_mol_pr    588 LLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVL    637

gb_BAA37152.1    701 PAGATLVLQAGKRTLSLKGDDLEHYKGERGRRGNKLPRGFQRVDSLLVDI    750
                     |..:||.:..|||.:.|:.::|:...|||||||. |.||.||:|.:.:| 
1zvu_A_mol_pr    638 PPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGT-LMRGLQRIDRVEID-    685

gb_BAA37152.1    751 PPQD    754
                         
1zvu_A_mol_pr    685 ----    685


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