########################################
# Program: needle
# Rundate: Wed 30 May 2018 11:16:58
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_BAA11086.1_ARO_3003314_Staphylococcus_4i3h_B/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_BAA11086.1_ARO_3003314_Staphylococcus_4i3h_B/gb_BAA11086.1_ARO_3003314_Staphylococcus_aureus_parE_conferring_resistance_to_aminocoumarin__Staphylococcus_aureus_RN4220.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_BAA11086.1_ARO_3003314_Staphylococcus_4i3h_B/4i3h_B.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_BAA11086.1_ARO_3003314_Staphylococcus_4i3h_B/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_BAA11086.1_ARO_3003314_Staphylococcus_aureus_parE_conferring_resistance_to_aminocoumarin__Staphylococcus_aureus_RN4220
# 2: 4i3h_B_mol_protein_length_1144__Topoisomerase_IV_subunit_B,_DNA_topoisomerase_4_subunit_A_chimera
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1125
# Identity:     393/1125 (34.9%)
# Similarity:   478/1125 (42.5%)
# Gaps:         552/1125 (49.1%)
# Score: 1948.5
# 
#
#=======================================

gb_BAA11086.1      1 MNKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVD     50
                                    |||:||||||||||||||..||||||:|||||:||
4i3h_B_mol_pr      1 ---------------EGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVD     35

gb_BAA11086.1     51 EVLNGYGNEIDVTINKDGSISIEDNGRGMPTGIHKSGKPTVEVIFTVLHA    100
                     |.|:|: :.||||||||||::::|:              |||||||:|||
4i3h_B_mol_pr     36 EALSGF-DRIDVTINKDGSLTVQDH--------------TVEVIFTILHA     70

gb_BAA11086.1    101 GGKFGQGGYKTSGGLHGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGS    150
                     ||||            |||:|||||||.||||||.|||.:|.|.|:|||.
4i3h_B_mol_pr     71 GGKF------------GVGSSVVNALSSWLEVEITRDGAVYKQRFENGGK    108

gb_BAA11086.1    151 PSSGLVKKGKTKKTGTKVTFKPDDTIFKASTSFNFDVLSERLQESAFLLK    200
                     |.:.|.|.|...||||||||.||.||| ::|.|.::.:||||.|||||||
4i3h_B_mol_pr    109 PVTTLKKIGTAPKTGTKVTFMPDATIF-STTDFKYNTISERLNESAFLLK    157

gb_BAA11086.1    201 NLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVLHDVATFSGEAN    250
                     |:.::|.|.|:  :....:|||.|:::||||:||.||:|..|..|.||.|
4i3h_B_mol_pr    158 NVTLSLTDKRT--DEAIEFHYENGVQDFVSYLNEDKEILTPVLYFEGEDN    205

gb_BAA11086.1    251 GIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYAR    300
                     |.:|:||.||||.:|::|||||||||||||||||.|.|:|:|:|.|||||
4i3h_B_mol_pr    206 GFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVMNDYAR    255

gb_BAA11086.1    301 RINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR    350
                          ||...||:|:|.||||.||:|:.:|||.||||||||.|||:..||
4i3h_B_mol_pr    256 -----KTGLLNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLAR    300

gb_BAA11086.1    351 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGK    400
                     ..||.:|||||.|:|.|.|:|:.:|::|||||:.|||||||||::     
4i3h_B_mol_pr    301 PVVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDE-----    345

gb_BAA11086.1    401 KNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAIL    450
                              |||||||||||..|||||||||||||||||.||||||||||
4i3h_B_mol_pr    346 ---------SGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAIL    386

gb_BAA11086.1    451 PLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNYNRVII    500
                     |||||||||.||::.||.|||||||:|:|||||||.||.|||:||:::||
4i3h_B_mol_pr    387 PLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANYDKIII    436

gb_BAA11086.1    501 MTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTK    550
                     ||||||||||||.||||||::||:|||:||.|:||||||||:        
4i3h_B_mol_pr    437 MTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM--------    478

gb_BAA11086.1    551 RVEYAWTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTL    600
                         ||||.||.:|         |||||||||||.:||||||||||||||
4i3h_B_mol_pr    479 ----AWTDGELEEL---------LQRYKGLGEMNADQLWETTMNPETRTL    515

gb_BAA11086.1    601 IRVQVEDEVRSSKRVTTLMGDKVQPRREWIEKHVEFGMQEDQSILDNSEV    650
                     |||.:||..|:.:||..||||||:|||:|||.:|:|     .|.:.|..:
4i3h_B_mol_pr    516 IRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKF-----TSNIQNMSL    560

gb_BAA11086.1    651 QVLENDQFDEEEI-------------------------------------    663
                     :.:..::|.....                                     
4i3h_B_mol_pr    561 EDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSY    610

gb_BAA11086.1    663 --------------------------------------------------    663
                                                                       
4i3h_B_mol_pr    611 RKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMD    660

gb_BAA11086.1    663 --------------------------------------------------    663
                                                                       
4i3h_B_mol_pr    661 GDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAF    710

gb_BAA11086.1    663 --------------------------------------------------    663
                                                                       
4i3h_B_mol_pr    711 PNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLP    760

gb_BAA11086.1    663 --------------------------------------------------    663
                                                                       
4i3h_B_mol_pr    761 GPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEI    810

gb_BAA11086.1    663 --------------------------------------------------    663
                                                                       
4i3h_B_mol_pr    811 PYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTE    860

gb_BAA11086.1    663 --------------------------------------------------    663
                                                                       
4i3h_B_mol_pr    861 LVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILA    910

gb_BAA11086.1    663 --------------------------------------------------    663
                                                                       
4i3h_B_mol_pr    911 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSY    960

gb_BAA11086.1    663 --------------------------------------------------    663
                                                                       
4i3h_B_mol_pr    961 DFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTM   1010

gb_BAA11086.1    663 -------------------------    663
                                              
4i3h_B_mol_pr   1011 YNLMKKELREVKKKFATPRLSSLED   1035


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