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# Program: needle
# Rundate: Wed 30 May 2018 16:51:02
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AQA08261.1_ARO_3004097_Streptococcus_4q2g_B/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AQA08261.1_ARO_3004097_Streptococcus_4q2g_B/gb_AQA08261.1_ARO_3004097_Streptococcus_mitis_CdsA_with_mutation_conferring_daptomycin_resistance__Streptococcus_oralis.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AQA08261.1_ARO_3004097_Streptococcus_4q2g_B/4q2g_B.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AQA08261.1_ARO_3004097_Streptococcus_4q2g_B/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_AQA08261.1_ARO_3004097_Streptococcus_mitis_CdsA_with_mutation_conferring_daptomycin_resistance__Streptococcus_oralis
# 2: 4q2g_B_mol_protein_length_290__Phosphatidate_cytidylyltransferase
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 292
# Identity:     103/292 (35.3%)
# Similarity:   151/292 (51.7%)
# Gaps:          48/292 (16.4%)
# Score: 342.0
# 
#
#=======================================

gb_AQA08261.1      1 MTKDLQKRTLFAVLALAIFLPVLFAGGLLLQIGIGLLAMLGVHELLHMKG     50
                       .||:.|.:.|.: :|.|:.:.|.....|   |||     |..:|.:.|
4q2g_B_mol_pr      1 --DDLKTRVITASV-VAPFVVLCFVSYESL---IGL-----VSAILILAG     39

gb_AQA08261.1     51 LKTMTIEGALTLFATFALTVPLENY--------------LTFLPVDGNVV     86
                     .:.:|:| .....|.|...:.|..|              |:.|.:.|  |
4q2g_B_mol_pr     40 YELITLE-MKERDARFFYVILLALYPVLYGLVFEEPTQPLSILFITG--V     86

gb_AQA08261.1     87 AYSVLITIMLGTTVFSKNYTIEDAAFPIAVSFYVGFGFNALLDA-RVAGF    135
                     .:| |||....:.||.   |:  |||.||: .||.|..:..|.. |..|.
4q2g_B_mol_pr     87 VFS-LITDKDPSQVFK---TV--AAFSIAL-IYVTFFLSFFLPIYRDFGA    129

gb_AQA08261.1    136 DKVLLALFIVWATDSAAYLTGMNFGKHKLAPRVSPNKSIEGFVGGILGAV    185
                     ...||.|...|..||.||.||:.||:.:::||.||.||:||.:||.||.|
4q2g_B_mol_pr    130 ANALLVLTSTWVFDSFAYFTGLKFGRTRISPRYSPRKSLEGVIGGFLGVV    179

gb_AQA08261.1    186 LITVIF-MLVDSTVALPYGIYRMSL-FAAFFSVAGQFGDLIESAMKRHFG    233
                     :.|.:: ::|:..:::....:|..| |||..::...|||:.|||:|||:|
4q2g_B_mol_pr    180 IYTFLYRLVVNDLLSVNVICFRTFLPFAATVAIMDTFGDIFESALKRHYG    229

gb_AQA08261.1    234 VKDSGKFIPGHGGVLDRFDSMLIVFPMMHLFGLF--------    267
                     ||||||.:|||||:|||.|.:|.|.|:.::  :|        
4q2g_B_mol_pr    230 VKDSGKTLPGHGGMLDRIDGLLFVAPVCYI--VFKILEGVVR    269


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