########################################
# Program: needle
# Rundate: Wed 30 May 2018 14:24:42
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_85/gb_ALJ89624.1_ARO_3003818_Acinetobacter_1zvu_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_ALJ89624.1_ARO_3003818_Acinetobacter_1zvu_A/gb_ALJ89624.1_ARO_3003818_Acinetobacter_baumannii_parC_conferring_resistance_to_fluoroquinolone__Acinetobacter_baumannii.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_ALJ89624.1_ARO_3003818_Acinetobacter_1zvu_A/1zvu_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_85/gb_ALJ89624.1_ARO_3003818_Acinetobacter_1zvu_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_ALJ89624.1_ARO_3003818_Acinetobacter_baumannii_parC_conferring_resistance_to_fluoroquinolone__Acinetobacter_baumannii
# 2: 1zvu_A_mol_protein_length_716__Topoisomerase_IV_subunit_A
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 746
# Identity:     395/746 (52.9%)
# Similarity:   511/746 (68.5%)
# Gaps:          68/746 ( 9.1%)
# Score: 1979.0
# 
#
#=======================================

gb_ALJ89624.1      1 MTSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIV     50
                                                    |||||.|.|||||||||||
1zvu_A_mol_pr      1 -------------------------------DRALPFIGDGLKPVQRRIV     19

gb_ALJ89624.1     51 YAMSELGLKSSGKPKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYR    100
                     ||||||||          |||||||||||||||.||||||||||||||||
1zvu_A_mol_pr     20 YAMSELGL----------RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYR     59

gb_ALJ89624.1    101 YPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDN    150
                     |||::||||||:||||||||||||||::||.|||||||||||||::|..|
1zvu_A_mol_pr     60 YPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPN    109

gb_ALJ89624.1    151 FDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIALI    200
                     |||:|:||..||||:|||||||||||||||||||||||||||.:..||||
1zvu_A_mol_pr    110 FDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALI    159

gb_ALJ89624.1    201 RNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYT    250
                     ..|:|:.::|.:.:..||.||:|||||...|:.||...||||.|||||:.
1zvu_A_mol_pr    160 DQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK    209

gb_ALJ89624.1    251 IEKNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTR    300
                     .|...:||:.||:||||::|:.|||.||:.||||:|.|:|||||||||||
1zvu_A_mol_pr    210 KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR    259

gb_ALJ89624.1    301 LVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRI    350
                     ||||.||||:|.:.||:|||||||||.|||:||||||.||||.||::..|
1zvu_A_mol_pr    260 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEI    309

gb_ALJ89624.1    351 LLEWIEIRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREE    400
                     |.||:..|:.||.|||.|.|.::.||||||.|||:|:|:||.||.|||.|
1zvu_A_mol_pr    310 LSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE    359

gb_ALJ89624.1    401 DQPKPVLMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAI    450
                     |:|||.||..|.:.|.|||||||||||||||||||:||.||.||..:...
1zvu_A_mol_pr    360 DEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQ    409

gb_ALJ89624.1    451 IREQLENPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQIKEQDLMP    500
                     ::..|.:...:.||:..||:.||:.:||:||||:..|.||..:.|.|::|
1zvu_A_mol_pr    410 LQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLP    459

gb_ALJ89624.1    501 AETVTVVLSEAGWVRAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFL    550
                     :|.||:|||:.||||:|||               :.:...||:||.|.|:
1zvu_A_mol_pr    460 SEPVTIVLSQMGWVRSAKG---------------FKAAVKGKSNQPVVFV    494

gb_ALJ89624.1    551 DETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVYLDDDESELIA    600
                     |.||||||:....|||||   :||:.||:...|.:...:.::.|:.:|:.
1zvu_A_mol_pr    495 DSTGRSYAIDPITLPSAR---EPLTGKLTLPPGATVDHMLMESDDQKLLM    541

gb_ALJ89624.1    601 ASSAGYGFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTH-LAVL    649
                     ||.|||||......|....:|||..:|:|:.|..:|.:..::.:. |..:
1zvu_A_mol_pr    542 ASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI    591

gb_ALJ89624.1    650 SSAGRLLILDLAELPNLNKGKGNKLIQL------EGKEQILSMTTLNLDE    693
                     :.|||:|:..:::||.|:||||||:|.:      .|::.:..:..|....
1zvu_A_mol_pr    592 TQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQS    641

gb_ALJ89624.1    694 IIQVVAGQQHLKLKGDDLQKYMGKRASKGQLLPRGYQKANKLLIQR    739
                     .:.:..|::.:||:.::|||..|:|..:|.|: ||.|:.:::.|. 
1zvu_A_mol_pr    642 TLTIHVGKRKIKLRPEELQKVTGERGRRGTLM-RGLQRIDRVEID-    685


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