########################################
# Program: needle
# Rundate: Wed 30 May 2018 16:33:39
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AKJ52802.1_ARO_3003310_Mycoplasma_4juo_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AKJ52802.1_ARO_3003310_Mycoplasma_4juo_A/gb_AKJ52802.1_ARO_3003310_Mycoplasma_hominis_parC_conferring_resistance_to_fluoroquinolone__Mycoplasma_hominis.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AKJ52802.1_ARO_3003310_Mycoplasma_4juo_A/4juo_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AKJ52802.1_ARO_3003310_Mycoplasma_4juo_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_AKJ52802.1_ARO_3003310_Mycoplasma_hominis_parC_conferring_resistance_to_fluoroquinolone__Mycoplasma_hominis
# 2: 4juo_A_mol_protein_length_496__DNA_topoisomerase_4_subunit_A
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 939
# Identity:     241/939 (25.7%)
# Similarity:   339/939 (36.1%)
# Gaps:         466/939 (49.6%)
# Score: 1158.5
# 
#
#=======================================

gb_AKJ52802.1      1 MKKDRKEEIQEVTENIIEKNMADIMSDRFGRYSKYIIQQRAIPDARDGLK     50
                                   ||...::.|||.:|||||||||||.||:||.|||||
4juo_A_mol_pr      1 --------------NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLK     36

gb_AKJ52802.1     51 PVQRRILYSMWNLHLKNSEPF----KKSARIVGDVIGRYHPHGDSSIYEA     96
                     ||||||||||    .|:|..|    :|||:.||:::|.:|||||||||:|
4juo_A_mol_pr     37 PVQRRILYSM----NKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDA     82

gb_AKJ52802.1     97 LVRMAQDWKSNFPLIEMHGNKGSIDDDPAAAMRYTESRLEKISELMLRDL    146
                     :|||:|:||:...|:|||||.||:|.||.|||||||:||.:|:..:|:|:
4juo_A_mol_pr     83 MVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDI    132

gb_AKJ52802.1    147 DRKVVKMAPNFDDSEYEPIVLPALFPNLLVNGAKGIAAGFATEIPPHNLG    196
                     ::|.|..|.||||:|.||.||||.||||||||:.||:||:||:||||||.
4juo_A_mol_pr    133 EKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLA    182

gb_AKJ52802.1    197 EVIDATIALIKNPTISIEELSEIVKGPDFPTGAIINGINEIKKALSSGQG    246
                     |||||.:.:|.:||..|::|.|.:.||||||||||.|.:|||||..:|:|
4juo_A_mol_pr    183 EVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKG    232

gb_AKJ52802.1    247 RITISSKYHYVYDKKDESKIIGIEIIEIPFGVVKSKLVADIDAIAIDKKI    296
                     |:.:.||......|..:.:|:   |.|||:.:.|:.||..||.:.::.|:
4juo_A_mol_pr    233 RVVVRSKTEIEKLKGGKEQIV---ITEIPYEINKANLVKKIDDVRVNNKV    279

gb_AKJ52802.1    297 SGIKEVLDQTDRNGISIFIQLEDGANADAIIAYLMNKTELSISYSYNMVA    346
                     :||.||.|::||:|:.|.|:|:..||.:.::.||...|:|.|:|::||||
4juo_A_mol_pr    280 AGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVA    329

gb_AKJ52802.1    347 IDNNRP--VILNLYSALIAYLSHLKEVNINGINYDLKKFKLRLEIVEGFI    394
                     |||..|  ||:.:.|   :|::|.:||.:....:|.:|.:.||.||||.|
4juo_A_mol_pr    330 IDNFTPRQVIVPILS---SYIAHRREVILARSRFDKEKAEKRLHIVEGLI    376

gb_AKJ52802.1    395 KVAEISDEVIHLIKESDNSKKGVILALMNKFKFSELQATAIAELRLYKLS    444
                     :|..|.||||.||:.|:| |......|...:.|:|.||.||..|:||:|:
4juo_A_mol_pr    377 RVISILDEVIALIRASEN-KADAKENLKVSYDFTEEQAEAIVTLQLYRLT    425

gb_AKJ52802.1    445 RMDQIEFQEEKKNLEIQIENCNKLLNDKWEFNQYLIKQLLEIKNQYSKPR    494
                     . |.:..|||:..|..:|.....::.|:......:.|:|.|:|.::: ||
4juo_A_mol_pr    426 N-DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFT-PR    473

gb_AKJ52802.1    495 LTEISDQKIDKEIDHKLLTKNEDFYLYITKDGYYKKISLKVYTSNELNTF    544
                     |:.:.|                                            
4juo_A_mol_pr    474 LSSLED--------------------------------------------    479

gb_AKJ52802.1    545 KLKEEDNVFYFDKVNSLSKILFFTNLGNYFIIDCHLFKDCNWKDLGQHIS    594
                                                                       
4juo_A_mol_pr    479 --------------------------------------------------    479

gb_AKJ52802.1    595 SIVALESSEKIIRVIEITSFNSYANFILMSKLGYAKKVNLRDFENKSSLK    644
                                                                       
4juo_A_mol_pr    479 --------------------------------------------------    479

gb_AKJ52802.1    645 TKTCMSFKDDNDELIDAQISNDEKMLFILLNNGMYHLVSENELKVGISLK    694
                                                                       
4juo_A_mol_pr    479 --------------------------------------------------    479

gb_AKJ52802.1    695 ARGIRLLLNLYKHPQLQVSGFITVSKYNNIIYLTQGGYIKCWDTSKLELT    744
                                                                       
4juo_A_mol_pr    479 --------------------------------------------------    479

gb_AKJ52802.1    745 TRNTPKMLFTPLKNNILGLQSLAVTLSNLKMLYTDNNGNLAEYDWKFILK    794
                                                                       
4juo_A_mol_pr    479 --------------------------------------------------    479

gb_AKJ52802.1    795 DKTKESKLLKLDYSFTNPGYFITPIKINELIEADEIEQEKIRQEYQGYID    844
                                                                       
4juo_A_mol_pr    479 --------------------------------------------------    479

gb_AKJ52802.1    845 KNIELTAEHALIKKSYDQDIQHLNNEEQEELFQISTEDIELPNVSNNVND    894
                                                                       
4juo_A_mol_pr    479 --------------------------------------------------    479

gb_AKJ52802.1    895 NQKDKKNIATKESVSQKIQEIEKIDLETIMQKIKQIKKK    933
                                                            
4juo_A_mol_pr    479 ---------------------------------------    479


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