########################################
# Program: needle
# Rundate: Wed 30 May 2018 13:19:22
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_low90/gb_AJF82744.1_ARO_3003817_Acinetobacter_3lpx_B/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_AJF82744.1_ARO_3003817_Acinetobacter_3lpx_B/gb_AJF82744.1_ARO_3003817_Acinetobacter_baumannii_gyrA_conferring_resistance_to_fluoroquinolones__Acinetobacter_baumannii.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_AJF82744.1_ARO_3003817_Acinetobacter_3lpx_B/3lpx_B.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_low90/gb_AJF82744.1_ARO_3003817_Acinetobacter_3lpx_B/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_AJF82744.1_ARO_3003817_Acinetobacter_baumannii_gyrA_conferring_resistance_to_fluoroquinolones__Acinetobacter_baumannii
# 2: 3lpx_B_mol_protein_length_500__DNA_gyrase,_A_subunit
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 906
# Identity:     295/906 (32.6%)
# Similarity:   376/906 (41.5%)
# Gaps:         450/906 (49.7%)
# Score: 1501.0
# 
#
#=======================================

gb_AJF82744.1      1 MSVSEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAM     50
                                                   |||||||||||||||||:||
3lpx_B_mol_pr      1 ------------------------------ALPDVRDGLKPVHRRVLFAM     20

gb_AJF82744.1     51 HELGNDYNKAYKKSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLL    100
                     ..||||:|||||||||||||||||||||||:|||:|||||||.|||||:|
3lpx_B_mol_pr     21 DVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYML     70

gb_AJF82744.1    101 VDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLADLEKDTVDWEDNYDGS    150
                     |||||||||:||||||||||||:||:|:||.:||||:|:|||:..||||:
3lpx_B_mol_pr     71 VDGQGNFGSVDGDSAAAMRYTEIRMSKIAHSILADLDKETVDFVPNYDGT    120

gb_AJF82744.1    151 ERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNMTEVVNACLAYADNPN    200
                     |.||.|:||||||||:||.:      |||:.|||:|||:|||||..||..
3lpx_B_mol_pr    121 EHIPAVMPTRVPNLLVNGTS------ATNIPPHNLTEVINACLALIDNSE    164

gb_AJF82744.1    201 ISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYHFEEDE    250
                     ::.|.::|:|.||||||.|||.|::||.:|||||:|::.||.:...:   
3lpx_B_mol_pr    165 LTFEEILEHIPGPDFPTAGIISGRAGIEEAYRTGRGKIKIRARASID---    211

gb_AJF82744.1    251 KTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMR    300
                      .|:.||:..|:||||||||:||::|||||:|:|||||.|||||||:|||
3lpx_B_mol_pr    212 -VGKETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDESDKDGMR    260

gb_AJF82744.1    301 IAIDLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIA    350
                     :.|::||||..|||:|||:..||::.||.:|||.|.|||||:.|:|:::.
3lpx_B_mol_pr    261 MVIEIKRGEVGEVVLNNLYKLTQMQVSFGLNMVALTNGQPKIFNIKEMLE    310

gb_AJF82744.1    351 AFIRHRQEVVTRRTMFELRKARERGHILEGLTVALANIDEIIETIKTSAN    400
                     ||:.||:|||||||:|||||||:|.||||||::||||||.|||.||.|.|
3lpx_B_mol_pr    311 AFVLHRREVVTRRTIFELRKARDRAHILEGLSIALANIDPIIEMIKNSNN    360

gb_AJF82744.1    401 PAEARERLLAGEWAGGGVVALLEKAGAISVRPDEIEGEDPNRPFGLSDSI    450
                     ..|:.|:|::..|..|.           :.||:.:|              
3lpx_B_mol_pr    361 RKESEEKLISQGWELGD-----------AARPEWLE--------------    385

gb_AJF82744.1    451 YRLSPT--QVGAILELRLHRLTGLEQDKLHAEYTEILGQIAELTAILNDF    498
                         ||  |..||::|:|::|:|:|.||:.:||..:|..||||..||...
3lpx_B_mol_pr    386 ----PTAEQAKAIVDLQLYKLSGMEHDKILSEYKALLDLIAELMHILATP    431

gb_AJF82744.1    499 NLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVVLTVSQ    548
                     ..||.||.|||..:..::||.|||||.                       
3lpx_B_mol_pr    432 ARLMEVICEELVAIRDEFGDERRTEIT-----------------------    458

gb_AJF82744.1    549 TGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTN    598
                                                                       
3lpx_B_mol_pr    458 --------------------------------------------------    458

gb_AJF82744.1    599 VGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPENHY    648
                                                                       
3lpx_B_mol_pr    458 --------------------------------------------------    458

gb_AJF82744.1    649 VFMATASGTVKRVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIM    698
                                                                       
3lpx_B_mol_pr    458 --------------------------------------------------    458

gb_AJF82744.1    699 LFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDS    748
                                                                       
3lpx_B_mol_pr    458 --------------------------------------------------    458

gb_AJF82744.1    749 DDNDDSTDSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRG    798
                                                                       
3lpx_B_mol_pr    458 --------------------------------------------------    458

gb_AJF82744.1    799 GKGVIAIKTSERNGELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGR    848
                                                                       
3lpx_B_mol_pr    458 --------------------------------------------------    458

gb_AJF82744.1    849 NAQGVRLIRLSEEETLVGVVSIEAVEDEEELLEGEVDTTETDSEEAVSNN    898
                                                                       
3lpx_B_mol_pr    458 --------------------------------------------------    458

gb_AJF82744.1    899 EDTSEE    904
                           
3lpx_B_mol_pr    458 ------    458


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