######################################## # Program: needle # Rundate: Wed 30 May 2018 16:50:14 # Commandline: needle # -outfile /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AFN51820.1_ARO_3003453_Mycobacterium_3byw_B/needle.txt # -asequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AFN51820.1_ARO_3003453_Mycobacterium_3byw_B/gb_AFN51820.1_ARO_3003453_Mycobacterium_tuberculosis_embA_mutant_conferring_resistance_to_ethambutol__Mycobacterium_tuberculosis_H37Rv.fa # -bsequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AFN51820.1_ARO_3003453_Mycobacterium_3byw_B/3byw_B.fa # -gapopen 10 # -gapextend 0.5 # Align_format: srspair # Report_file: /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AFN51820.1_ARO_3003453_Mycobacterium_3byw_B/needle.txt ######################################## #======================================= # # Aligned_sequences: 2 # 1: gb_AFN51820.1_ARO_3003453_Mycobacterium_tuberculosis_embA_mutant_conferring_resistance_to_ethambutol__Mycobacterium_tuberculosis_H37Rv # 2: 3byw_B_mol_protein_length_177__Putative_arabinofuranosyltransferase # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 1102 # Identity: 50/1102 ( 4.5%) # Similarity: 84/1102 ( 7.6%) # Gaps: 951/1102 (86.3%) # Score: 195.0 # # #======================================= gb_AFN51820.1 1 MPHDGNERSHRIARLAAVVSGIAGLLLCGIVPLLPVNQTTATIFWPQGST 50 .:::.||| 3byw_B_mol_pr 1 ---------------------------------------QSSVSWPQ--- 8 gb_AFN51820.1 51 ADGNITQITAPLVSGAPRALDISIPCSAIATLPANGGLVLSTLPAGGVDT 100 :|::..::|||:|..|.:.|..||.:::..|..:..|:|.||||...|. 3byw_B_mol_pr 9 -NGSLNSVSAPLMSYTPISFDAKIPVASVDKLRKDQDLILGTLPANSEDA 57 gb_AFN51820.1 101 GKAGLFVRANQDTVVVAFRDSVAAVAARSTIA---AGGCSALHIWADTGG 147 |..|||||||.|.:.:.....:....::..:| |....|:....|... 3byw_B_mol_pr 58 GARGLFVRANDDGLQITSHGELVLDLSKRELAQLPADATIAISATEDETT 107 gb_AFN51820.1 148 AGADFMGIPGGAGTLPPEKKPQVGGIFTDLKVGA-----QPGLSARVDID 192 ||.: |......|:..:.:|.:.||:|:|:..| ..||:|.|:|: 3byw_B_mol_pr 108 AGIE--GDDSTTETVERDVRPIIMGIYTELESNAAADLLNAGLNAHVEIN 155 gb_AFN51820.1 193 TRFITTPGALKKAVMLLGVLAVLVAMVGLAALDRLSRGRTLRDWLTRYRP 242 :||. 3byw_B_mol_pr 156 SRFT---------------------------------------------- 159 gb_AFN51820.1 243 RVRVGFASRLADAAVIATLLLWHVIGATSSDDGYLLTVARVAPKAGYVAN 292 3byw_B_mol_pr 159 -------------------------------------------------- 159 gb_AFN51820.1 293 YYRYFGTTEAPFDWYTSVLAQLAAVSTAGVWMRLPATLAGIACWLIVSRF 342 3byw_B_mol_pr 159 -------------------------------------------------- 159 gb_AFN51820.1 343 VLRRLGPGPGGLASNRVAVFTAGAVFLSAWLPFNNGLRPEPLIALGVLVT 392 3byw_B_mol_pr 159 -------------------------------------------------- 159 gb_AFN51820.1 393 WVLVERSIALGRLAPAAVAIIVATLTATLAPQGLIALAPLLTGARAIAQR 442 3byw_B_mol_pr 159 -------------------------------------------------- 159 gb_AFN51820.1 443 IRRRRATDGLLAPLAVLAAALSLITVVVFRDQTLATVAESARIKYKVGPT 492 3byw_B_mol_pr 159 -------------------------------------------------- 159 gb_AFN51820.1 493 IAWYQDFLRYYFLTVESNVEGSMSRRFAVLVLLFCLFGVLFVLLRRGRVA 542 3byw_B_mol_pr 159 -------------------------------------------------- 159 gb_AFN51820.1 543 GLASGPAWRLIGTTAVGLLLLTFTPTKWAVQFGAFAGLAGVLGAVTAFTF 592 3byw_B_mol_pr 159 -------------------------------------------------- 159 gb_AFN51820.1 593 ARIGLHSRRNLTLYVTALLFVLAWATSGINGWFYVGNYGVPWYDIQPVIA 642 3byw_B_mol_pr 159 -------------------------------------------------- 159 gb_AFN51820.1 643 SHPVTSMFLTLSILTGLLAAWYHFRMDYAGHTEVKDNRRNRILASTPLLV 692 3byw_B_mol_pr 159 -------------------------------------------------- 159 gb_AFN51820.1 693 VAVIMVAGEVGSMAKAAVFRYPLYTTAKANLTALSTGLSSCAMADDVLAE 742 3byw_B_mol_pr 159 -------------------------------------------------- 159 gb_AFN51820.1 743 PDPNAGMLQPVPGQAFGPDGPLGGISPVGFKPEGVGEDLKSDPVVSKPGL 792 3byw_B_mol_pr 159 -------------------------------------------------- 159 gb_AFN51820.1 793 VNSDASPNKPNAAITDSAGTAGGKGPVGINGSHAALPFGLDPARTPVMGS 842 3byw_B_mol_pr 159 -------------------------------------------------- 159 gb_AFN51820.1 843 YGENNLAATATSAWYQLPPRSPDRPLVVVSAAGAIWSYKEDGDFIYGQSL 892 3byw_B_mol_pr 159 -------------------------------------------------- 159 gb_AFN51820.1 893 KLQWGVTGPDGRIQPLGQVFPIDIGPQPAWRNLRFPLAWAPPEADVARIV 942 3byw_B_mol_pr 159 -------------------------------------------------- 159 gb_AFN51820.1 943 AYDPNLSPEQWFAFTPPRVPVLESLQRLIGSATPVLMDIATAANFPCQRP 992 3byw_B_mol_pr 159 -------------------------------------------------- 159 gb_AFN51820.1 993 FSEHLGIAELPQYRILPDHKQTAASSNLWQSSSTGGPFLFTQALLRTSTI 1042 3byw_B_mol_pr 159 -------------------------------------------------- 159 gb_AFN51820.1 1043 ATYLRGDWYRDWGSVEQYHRLVPADQAPDAVVEEGVITVPGWGRPGPIRA 1092 3byw_B_mol_pr 159 -------------------------------------------------- 159 gb_AFN51820.1 1093 LP 1094 3byw_B_mol_pr 159 -- 159 #--------------------------------------- #---------------------------------------