######################################## # Program: needle # Rundate: Wed 30 May 2018 12:42:04 # Commandline: needle # -outfile /Users/teresatavella/Documents/models_new/seqid60_low90/gb_AFN51819.1_ARO_3003327_Mycobacterium_3pty_A/needle.txt # -asequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_AFN51819.1_ARO_3003327_Mycobacterium_3pty_A/gb_AFN51819.1_ARO_3003327_Mycobacterium_tuberculosis_mutant_embC_conferring_resistance_to_ethambutol__Mycobacterium_tuberculosis_H37Rv.fa # -bsequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_AFN51819.1_ARO_3003327_Mycobacterium_3pty_A/3pty_A.fa # -gapopen 10 # -gapextend 0.5 # Align_format: srspair # Report_file: /Users/teresatavella/Documents/models_new/seqid60_low90/gb_AFN51819.1_ARO_3003327_Mycobacterium_3pty_A/needle.txt ######################################## #======================================= # # Aligned_sequences: 2 # 1: gb_AFN51819.1_ARO_3003327_Mycobacterium_tuberculosis_mutant_embC_conferring_resistance_to_ethambutol__Mycobacterium_tuberculosis_H37Rv # 2: 3pty_A_mol_protein_length_406__Arabinosyltransferase_C # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 1094 # Identity: 284/1094 (26.0%) # Similarity: 284/1094 (26.0%) # Gaps: 810/1094 (74.0%) # Score: 1458.5 # # #======================================= gb_AFN51819.1 1 MATEAAPPRIAVRLPSTSVRDAGANYRIARYVAVVAGLLGAVLAIATPLL 50 3pty_A_mol_pr 0 -------------------------------------------------- 0 gb_AFN51819.1 51 PVNQTTAQLNWPQNGTFASVEAPLIGYVATDLNITVPCQAAAGLAGSQNT 100 3pty_A_mol_pr 0 -------------------------------------------------- 0 gb_AFN51819.1 101 GKTVLLSTVPKQAPKAVDRGLLLQRANDDLVLVVRNVPLVTAPLSQVLGP 150 3pty_A_mol_pr 0 -------------------------------------------------- 0 gb_AFN51819.1 151 TCQRLTFTAHADRVAAEFVGLVQGPNAEHPGAPLRGERSGYDFRPQIVGV 200 3pty_A_mol_pr 0 -------------------------------------------------- 0 gb_AFN51819.1 201 FTDLAGPAPPGLSFSASVDTRYSSSPTPLKMAAMILGVALTGAALVALHI 250 3pty_A_mol_pr 0 -------------------------------------------------- 0 gb_AFN51819.1 251 LDTADGMRHRRFLPARWWSTGGLDTLVIAVLVWWHFVGANTSDDGYILTM 300 3pty_A_mol_pr 0 -------------------------------------------------- 0 gb_AFN51819.1 301 ARVSEHAGYMANYYRWFGTPEAPFGWYYDLLALWAHVSTASIWMRLPTLA 350 3pty_A_mol_pr 0 -------------------------------------------------- 0 gb_AFN51819.1 351 MALTCWWVISREVIPRLGHAVKTSRAAAWTAAGMFLAVWLPLDNGLRPEP 400 3pty_A_mol_pr 0 -------------------------------------------------- 0 gb_AFN51819.1 401 IIALGILLTWCSVERAVATSRLLPVAIACIIGALTLFSGPTGIASIGALL 450 3pty_A_mol_pr 0 -------------------------------------------------- 0 gb_AFN51819.1 451 VAIGPLRTILHRRSRRFGVLPLVAPILAAATVTAIPIFRDQTFAGEIQAN 500 3pty_A_mol_pr 0 -------------------------------------------------- 0 gb_AFN51819.1 501 LLKRAVGPSLKWFDEHIRYERLFMASPDGSIARRFAVLALVLALAVSVAM 550 3pty_A_mol_pr 0 -------------------------------------------------- 0 gb_AFN51819.1 551 SLRKGRIPGTAAGPSRRIIGITIISFLAMMFTPTKWTHHFGVFAGLAGSL 600 3pty_A_mol_pr 0 -------------------------------------------------- 0 gb_AFN51819.1 601 GALAAVAVTGAAMRSRRNRTVFAAVVVFVLALSFASVNGWWYVSNFGVPW 650 3pty_A_mol_pr 0 -------------------------------------------------- 0 gb_AFN51819.1 651 SNSFPKWRWSLTTALLELTVLVLLLAAWFHFVANGDGRRTARPTRFRARL 700 3pty_A_mol_pr 0 -------------------------------------------------- 0 gb_AFN51819.1 701 AGIVQSPLAIATWLLVLFEVVSLTQAMISQYPAWSVGRSNLQALAGKTCG 750 |||||||||||||||| 3pty_A_mol_pr 1 ----------------------------------SVGRSNLQALAGKTCG 16 gb_AFN51819.1 751 LAEDVLVELDPNAGMLAPVTAPLADALGAGLSEAFTPNGIPADVTADPVM 800 |||||||||||||||||||||||||||||||||||||||||||| 3pty_A_mol_pr 17 LAEDVLVELDPNAGMLAPVTAPLADALGAGLSEAFTPNGIPADV------ 60 gb_AFN51819.1 801 ERPGDRSFLNDDGLITGSEPGTEGGTTAAPGINGSRARLPYNLDPARTPV 850 |||||||||||||||||||||||||| 3pty_A_mol_pr 61 ------------------------GTTAAPGINGSRARLPYNLDPARTPV 86 gb_AFN51819.1 851 LGSWRAGVQVPAMLRSGWYRLPTNEQRDRAPLLVVTAAGRFDSREVRLQW 900 |||||||||||||||||||||||||||||||||||||||||||||||||| 3pty_A_mol_pr 87 LGSWRAGVQVPAMLRSGWYRLPTNEQRDRAPLLVVTAAGRFDSREVRLQW 136 gb_AFN51819.1 901 ATDEQAAAGHHGGSMEFADVGAAPAWRNLRAPLSAIPSTATQVRLVADDQ 950 |||||||||||||||||||||||||||||||||||||||||||||||||| 3pty_A_mol_pr 137 ATDEQAAAGHHGGSMEFADVGAAPAWRNLRAPLSAIPSTATQVRLVADDQ 186 gb_AFN51819.1 951 DLAPQHWIALTPPRIPRVRTLQNVVGAADPVFLDWLVGLAFPCQRPFGHQ 1000 |||||||||||||||||||||||||||||||||||||||||||||||||| 3pty_A_mol_pr 187 DLAPQHWIALTPPRIPRVRTLQNVVGAADPVFLDWLVGLAFPCQRPFGHQ 236 gb_AFN51819.1 1001 YGVDETPKWRILPDRFGAEANSPVMDHNGGGPLGITELLMRATTVASYLK 1050 ||||||||||||||| |||||||||||||||| 3pty_A_mol_pr 237 YGVDETPKWRILPDR-------------------ITELLMRATTVASYLK 267 gb_AFN51819.1 1051 DDWFRDWGALQRLTPYYPDAQPADLNLGTVTRSGLWSPAPLRRG 1094 ||||||||||||||||| 3pty_A_mol_pr 268 DDWFRDWGALQRLTPYY--------------------------- 284 #--------------------------------------- #---------------------------------------