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# Program: needle
# Rundate: Wed 30 May 2018 11:58:38
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_AFK58562.1_ARO_3003078_Enterococcus_4gvp_C/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_AFK58562.1_ARO_3003078_Enterococcus_4gvp_C/gb_AFK58562.1_ARO_3003078_Enterococcus_faecium_liaR_mutant_conferring_daptomycin_resistance__Enterococcus_faecium_DO.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_AFK58562.1_ARO_3003078_Enterococcus_4gvp_C/4gvp_C.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_AFK58562.1_ARO_3003078_Enterococcus_4gvp_C/needle.txt
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#=======================================
#
# Aligned_sequences: 2
# 1: gb_AFK58562.1_ARO_3003078_Enterococcus_faecium_liaR_mutant_conferring_daptomycin_resistance__Enterococcus_faecium_DO
# 2: 4gvp_C_mol_protein_length_208__Response_regulator_protein_vraR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 210
# Identity:     128/210 (61.0%)
# Similarity:   167/210 (79.5%)
# Gaps:           2/210 ( 1.0%)
# Score: 656.5
# 
#
#=======================================

gb_AFK58562.1      1 MIKVLLVDDHEMVRLGVSSYLSIQEDIEVIGEAENGRQGYEKAMTLRPDV     50
                     .||||.||||||||:|:|||||.|.||||:||..:|::...||..|:||:
4gvp_C_mol_pr      1 TIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDL     50

gb_AFK58562.1     51 ILMDLVMEEMDGIESTKAILKDWPEAKIIIVTSFIDDEKVYPAIEAGAAG    100
                     |||||:||:|||:|:|..|.||.|:.|::::||||:|::||.|::||...
4gvp_C_mol_pr     51 ILMDLLMEDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDS    100

gb_AFK58562.1    101 YLLKTSTAHEIADAIRATQRGERVLEPEVTTKMMEKMSRRNEPVLHEELT    150
                     |:|||::|.:||||:|.|.|||.|.||||..||..:|.:|.|  |:|.||
4gvp_C_mol_pr    101 YILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAE--LYEMLT    148

gb_AFK58562.1    151 NRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAA    200
                     .||.|||:||::|.||||||....||:|||||||||||:||||:|||||.
4gvp_C_mol_pr    149 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAV    198

gb_AFK58562.1    201 IYAFKHGLVK    210
                     ||||:|.|::
4gvp_C_mol_pr    199 IYAFQHNLIQ    208


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