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# Program: needle
# Rundate: Wed 30 May 2018 16:48:33
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AFK58561.1_ARO_3003079_Enterococcus_4gt8_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AFK58561.1_ARO_3003079_Enterococcus_4gt8_A/gb_AFK58561.1_ARO_3003079_Enterococcus_faecium_liaS_mutant_conferring_daptomycin_resistance__Enterococcus_faecium_DO.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AFK58561.1_ARO_3003079_Enterococcus_4gt8_A/4gt8_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AFK58561.1_ARO_3003079_Enterococcus_4gt8_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_AFK58561.1_ARO_3003079_Enterococcus_faecium_liaS_mutant_conferring_daptomycin_resistance__Enterococcus_faecium_DO
# 2: 4gt8_A_mol_protein_length_139__Sensor_protein_vraS
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 355
# Identity:      61/355 (17.2%)
# Similarity:    87/355 (24.5%)
# Gaps:         222/355 (62.5%)
# Score: 304.0
# 
#
#=======================================

gb_AFK58561.1      1 MMGKISRAMLAVYSGIAAFLIILFSLFTYFYASNQSHWWGELLRARLLYV     50
                                                                       
4gt8_A_mol_pr      0 --------------------------------------------------      0

gb_AFK58561.1     51 PLIFHLLAISLGVGLIVFLLLSLIQKTKYGKIEEKLRALSSGNYESKLLL    100
                                                                       
4gt8_A_mol_pr      0 --------------------------------------------------      0

gb_AFK58561.1    101 LPIPSASDDLYIKDIDKEITKIKEKMIEVSSELQIVTSRPQYVDGQTKEE    150
                                                                       
4gt8_A_mol_pr      0 --------------------------------------------------      0

gb_AFK58561.1    151 ILELERHRLARELHDSVSQQLFAAMMMMSALTEQAEKSETPEMFRKQLKM    200
                                                                       
4gt8_A_mol_pr      0 --------------------------------------------------      0

gb_AFK58561.1    201 VAEIINASQSEMRALLLHLRPVNLEEKSLKQGIEQLLKELQNKIQISLKW    250
                                         ...|::|||.:||:.|:.:||.|:.:.:..
4gt8_A_mol_pr      1 --------------------GAMLKDKSLGEGIKDLVIDLQKKVPMKVVH     30

gb_AFK58561.1    251 DVEDVKLSSSIEDHLFRIVQELLSNTLRHAKANELEVYLHKIDNNLLLRI    300
                     :::|.|:...||||||||.||.:||||||:...::.|.|...|:.|||||
4gt8_A_mol_pr     31 EIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRI     80

gb_AFK58561.1    301 IDDGTGFNMNETKTGSYGLNNIKERVAGIGGTVKIISFKGQGTSVEIKVP    350
                     .|:|.|||::|....||||.|::||...||.|..|:|....||.:|:|.|
4gt8_A_mol_pr     81 QDNGKGFNVDEKLEQSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAP    130

gb_AFK58561.1    351 LMKEA    355
                     |.|  
4gt8_A_mol_pr    131 LNK--    133


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