########################################
# Program: needle
# Rundate: Wed 30 May 2018 12:12:26
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_AFC91898.1_ARO_3003043_Streptococcus_1qme_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_AFC91898.1_ARO_3003043_Streptococcus_1qme_A/gb_AFC91898.1_ARO_3003043_Streptococcus_pneumoniae_PBP2x_conferring_resistance_to_amoxicillin__Streptococcus_pneumoniae.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_AFC91898.1_ARO_3003043_Streptococcus_1qme_A/1qme_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_AFC91898.1_ARO_3003043_Streptococcus_1qme_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_AFC91898.1_ARO_3003043_Streptococcus_pneumoniae_PBP2x_conferring_resistance_to_amoxicillin__Streptococcus_pneumoniae
# 2: 1qme_A_mol_protein_length_702__PENICILLIN-BINDING_PROTEIN_2X
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 750
# Identity:     525/750 (70.0%)
# Similarity:   541/750 (72.1%)
# Gaps:         192/750 (25.6%)
# Score: 2625.5
# 
#
#=======================================

gb_AFC91898.1      1 MKWTKRVIRYATKNRKSPAENRRRVGKSLSLLSVFVFAIFLVNFAVIIGT     50
                                                                       
1qme_A_mol_pr      0 --------------------------------------------------      0

gb_AFC91898.1     51 GTRFGTDLAKEAKKVHQTTRTVPAKRGTIYDRNGVPIAEDATSYNVYAVI    100
                                         |||||||||||||||||||||         
1qme_A_mol_pr      1 --------------------TVPAKRGTIYDRNGVPIAEDA---------     21

gb_AFC91898.1    101 DENYKSATGKILYVEKTQFNKVAEVFHKYLDMEESYVREQLSQPNLKQVS    150
                                                                       
1qme_A_mol_pr     21 --------------------------------------------------     21

gb_AFC91898.1    151 FGAKGNGITYANMMSIKKELETAEVKGIDFTTSPNRSYPNGQFASSFIGL    200
                                                    |||||||||||||||||||
1qme_A_mol_pr     22 -------------------------------TSPNRSYPNGQFASSFIGL     40

gb_AFC91898.1    201 AQLHENEDGSKSLLGTSGMESSLNSILAGKDGIITYEKDRLGNVVPGTEQ    250
                     |||||||||||||||||||||||||||||.||                  
1qme_A_mol_pr     41 AQLHENEDGSKSLLGTSGMESSLNSILAGTDG------------------     72

gb_AFC91898.1    251 VSQQTVDGKDVYTTISSTLQSFMETQMNAFQEKVKGKYMTATLVSAKTGE    300
                        :|:|||||||||||.|||||||||:||||||||||||||||||||||
1qme_A_mol_pr     73 ---RTMDGKDVYTTISSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGE    119

gb_AFC91898.1    301 ILATTQRPTFDADTKEGLTKDFVWRDILYQSNYEPGSPMKVMTLAASIDN    350
                     |||||||||||||||||:|:|||||||||||||||||.||||.|||:|||
1qme_A_mol_pr    120 ILATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSTMKVMMLAAAIDN    169

gb_AFC91898.1    351 NTFPGGEYFNSSELKIADVTIRDWDVNESLTGGGMMTFSQGFAHSSNVGM    400
                     |||||||.||||||||||.|||||||||.||||.||||||||||||||||
1qme_A_mol_pr    170 NTFPGGEVFNSSELKIADATIRDWDVNEGLTGGRMMTFSQGFAHSSNVGM    219

gb_AFC91898.1    401 TLLEQKMGDATWLDYLNRFKFGVPTRFGLTDEYAGQLPADNIVNIAQSSF    450
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
1qme_A_mol_pr    220 TLLEQKMGDATWLDYLNRFKFGVPTRFGLTDEYAGQLPADNIVNIAQSSF    269

gb_AFC91898.1    451 GQGISVTQTQMIRAFTAIANDGVMLEPKFISAIYDPNDQTARKSQKEVVG    500
                     |||||||||||||||||||||||||||||||||||||||||||||||:||
1qme_A_mol_pr    270 GQGISVTQTQMIRAFTAIANDGVMLEPKFISAIYDPNDQTARKSQKEIVG    319

gb_AFC91898.1    501 NPVSKDAASLTRTNMILVGTDPVYGTMYNHSTGKPTVTVPGQNVALKSGT    550
                     |||||||||||||||:||||||||||||||||||||||||||||||||||
1qme_A_mol_pr    320 NPVSKDAASLTRTNMVLVGTDPVYGTMYNHSTGKPTVTVPGQNVALKSGT    369

gb_AFC91898.1    551 AQIADEKNGGYLVGLTNYIFSAVSMNPAENPDFILYVTVQQPEHYSGIQL    600
                     ||||||||||||||||:||||||||:||||||||||||||||||||||||
1qme_A_mol_pr    370 AQIADEKNGGYLVGLTDYIFSAVSMSPAENPDFILYVTVQQPEHYSGIQL    419

gb_AFC91898.1    601 GEFANPILERASAMKDSLNLQTTAKALEQVSQQSPYPMPSVKDISPGDLA    650
                     ||||||||||||||||||||           |||||||||||||||||||
1qme_A_mol_pr    420 GEFANPILERASAMKDSLNL-----------QQSPYPMPSVKDISPGDLA    458

gb_AFC91898.1    651 EELRRNLVQPIVVGTGTKIKESSVEEGTNLAPNQQVILLSDKVEEIPDMY    700
                     ||||||||||||||||||||.||.|||.||||||||::||||.||:||||
1qme_A_mol_pr    459 EELRRNLVQPIVVGTGTKIKNSSAEEGKNLAPNQQVLILSDKAEEVPDMY    508

gb_AFC91898.1    701 GWKKETAEAFAKWLDIELEFEGSGSVVQKQDVRTNTAIKNIKKITLTLGD    750
                     ||.|||||..||||:|||||:||||.|||||||.|||||:||||||||||
1qme_A_mol_pr    509 GWTKETAETLAKWLNIELEFQGSGSTVQKQDVRANTAIKDIKKITLTLGD    558


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