######################################## # Program: needle # Rundate: Wed 30 May 2018 13:01:41 # Commandline: needle # -outfile /Users/teresatavella/Documents/models_new/seqid60_low90/gb_AFC91828.1_ARO_3003041_Streptococcus_2zc6_B/needle.txt # -asequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_AFC91828.1_ARO_3003041_Streptococcus_2zc6_B/gb_AFC91828.1_ARO_3003041_Streptococcus_pneumoniae_PBP1a_conferring_resistance_to_amoxicillin__Streptococcus_pneumoniae.fa # -bsequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_AFC91828.1_ARO_3003041_Streptococcus_2zc6_B/2zc6_B.fa # -gapopen 10 # -gapextend 0.5 # Align_format: srspair # Report_file: /Users/teresatavella/Documents/models_new/seqid60_low90/gb_AFC91828.1_ARO_3003041_Streptococcus_2zc6_B/needle.txt ######################################## #======================================= # # Aligned_sequences: 2 # 1: gb_AFC91828.1_ARO_3003041_Streptococcus_pneumoniae_PBP1a_conferring_resistance_to_amoxicillin__Streptococcus_pneumoniae # 2: 2zc6_B_mol_protein_length_390__Penicillin-binding_protein_1A # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 719 # Identity: 382/719 (53.1%) # Similarity: 384/719 (53.4%) # Gaps: 335/719 (46.6%) # Score: 2031.0 # # #======================================= gb_AFC91828.1 1 MNKPTILHLIKYLSISFLSLVIAAIVLGGGVFFYYVSKAPSLSESKLVAT 50 2zc6_B_mol_pr 0 -------------------------------------------------- 0 gb_AFC91828.1 51 TSSKIYDNKNQLIADLGSERRVNAQANDIPTDLVKAIVSIEDHRFFDHRG 100 2zc6_B_mol_pr 0 -------------------------------------------------- 0 gb_AFC91828.1 101 IDTIRILGAFLRNLQSNSLQGGSTLTQQLIKLTYFSTSTSDQTISRKTQE 150 2zc6_B_mol_pr 0 -------------------------------------------------- 0 gb_AFC91828.1 151 AWLAIQLEQKATKQEILTYYINKVYMSNGNYGMQTAAQNYYGKDLNNLSL 200 2zc6_B_mol_pr 0 -------------------------------------------------- 0 gb_AFC91828.1 201 PQLALLAGMPQAPNQYDPYSHPEAAQDRRNLVLSEMKNQGYISAEQYEKA 250 2zc6_B_mol_pr 0 -------------------------------------------------- 0 gb_AFC91828.1 251 VNTPITDGLQSLKSASNYPAYMDNYLKEVINQVEKETGYNLLTTGMDVYT 300 ||||||||||||||||||:||||||||||||||| 2zc6_B_mol_pr 1 ----------------NYPAYMDNYLKEVINQVEEETGYNLLTTGMDVYT 34 gb_AFC91828.1 301 NVDQEAQKHLWDIYNTDEYVAYPDDELQVASTIVDVSNGKVIAQLGARHQ 350 |||||||||||||||||||||||||||||||||||||||||||||||||| 2zc6_B_mol_pr 35 NVDQEAQKHLWDIYNTDEYVAYPDDELQVASTIVDVSNGKVIAQLGARHQ 84 gb_AFC91828.1 351 SSNVSFGINQAVETNRDWGSTMKPITDYAPALEYGVYDSTATIVHDEPYN 400 |||||||||||||||||||||||||||||||||||||||||||||||||| 2zc6_B_mol_pr 85 SSNVSFGINQAVETNRDWGSTMKPITDYAPALEYGVYDSTATIVHDEPYN 134 gb_AFC91828.1 401 YPGTNTPVYNWDRGYFGNITLQYALQQSRNVPAVETLNKVGLNRAKTFLN 450 |||||||||||||||||||||||||||||||||||||||||||||||||| 2zc6_B_mol_pr 135 YPGTNTPVYNWDRGYFGNITLQYALQQSRNVPAVETLNKVGLNRAKTFLN 184 gb_AFC91828.1 451 GLGIDYPSIHYSNAISSNTTESDKKYGASSEKMAAAYAAFANGGTYYKPM 500 |||||||||||||||||||||||||||||||||||||||||||||||||| 2zc6_B_mol_pr 185 GLGIDYPSIHYSNAISSNTTESDKKYGASSEKMAAAYAAFANGGTYYKPM 234 gb_AFC91828.1 501 YIHKVVFSDGSEKEFSNVGTRAMKETTAYMMTDMMKTVLSYGTGRNAYLA 550 ||||||||||||||||||||||||||||||||||||||||||||:||||| 2zc6_B_mol_pr 235 YIHKVVFSDGSEKEFSNVGTRAMKETTAYMMTDMMKTVLSYGTGQNAYLA 284 gb_AFC91828.1 551 WLPQAGKTGTSNYTDEEIENHIKTSQFVAPDELFAGYTRKYSMAVWTGYS 600 |||||||||||||||||||||||||||||||||||||||||||||||||| 2zc6_B_mol_pr 285 WLPQAGKTGTSNYTDEEIENHIKTSQFVAPDELFAGYTRKYSMAVWTGYS 334 gb_AFC91828.1 601 NRLTPLVGNGLTVAAKVYRSMMTYLSEGSNPEDWNIPEGLYRNGEFVFKN 650 |||||||||||||||||||||||||||||||||||||||||||||||||| 2zc6_B_mol_pr 335 NRLTPLVGNGLTVAAKVYRSMMTYLSEGSNPEDWNIPEGLYRNGEFVFKN 384 gb_AFC91828.1 651 GARSTWTQPAPQQPPSTESSSSSSDSSTSQSSSTTPSTNNSTTTDPNNNT 700 2zc6_B_mol_pr 384 -------------------------------------------------- 384 gb_AFC91828.1 701 QQSNTTPDQQNQNPQPAQP 719 2zc6_B_mol_pr 384 ------------------- 384 #--------------------------------------- #---------------------------------------