########################################
# Program: needle
# Rundate: Wed 30 May 2018 17:03:00
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_low85/gb_ADJ67256_ARO_3003319_Staphylococcus_4v36_B/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_ADJ67256_ARO_3003319_Staphylococcus_4v36_B/gb_ADJ67256_ARO_3003319_Staphylococcus_aureus_mprF_mutations_conferring_resistance_to_daptomycin__Staphylococcus_aureus.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_ADJ67256_ARO_3003319_Staphylococcus_4v36_B/4v36_B.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_low85/gb_ADJ67256_ARO_3003319_Staphylococcus_4v36_B/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_ADJ67256_ARO_3003319_Staphylococcus_aureus_mprF_mutations_conferring_resistance_to_daptomycin__Staphylococcus_aureus
# 2: 4v36_B_mol_protein_length_335__LYSYL-TRNA-DEPENDENT_L-YSYL-PHOSPHATIDYLGYCEROL_SYNTHASE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 836
# Identity:     147/836 (17.6%)
# Similarity:   206/836 (24.6%)
# Gaps:         522/836 (62.4%)
# Score: 742.0
# 
#
#=======================================

gb_ADJ67256_A      1 MNQEVKNKIFSILKITFATALFIFVAITLYRELSGINFKDTLVEFSKINR     50
                                                                       
4v36_B_mol_pr      0 --------------------------------------------------      0

gb_ADJ67256_A     51 MSLVLLFIGGGASLVILSMYDVILSRALKMDISLGKVLRVSYIINALNAI    100
                                                                       
4v36_B_mol_pr      0 --------------------------------------------------      0

gb_ADJ67256_A    101 VGFGGFIGAGVRAMVYKNYTHDKKKLVHFISLILISMLTGLSLLSLLIVF    150
                                                                       
4v36_B_mol_pr      0 --------------------------------------------------      0

gb_ADJ67256_A    151 HVFDASLILDKITWVRWVLYVVSFFLPLFIIYSMVRPPDKNNRFVGLYCT    200
                                                                       
4v36_B_mol_pr      0 --------------------------------------------------      0

gb_ADJ67256_A    201 LVSCVEWLAAAVVLYFCGVIVDAHVSFMSFIAIFIIAALSGLVSFIPGGF    250
                                                                       
4v36_B_mol_pr      0 --------------------------------------------------      0

gb_ADJ67256_A    251 GAFDLVVLLGFKTLGVPEEKVLLMLLLYRFAYYFVPVIIALILSSFEFGT    300
                                                                       
4v36_B_mol_pr      0 --------------------------------------------------      0

gb_ADJ67256_A    301 SAKKYIEGSKYFIPAKDVTSFLMSYQKDIIAKIPSLSLAILVFFTSMINL    350
                                                                       
4v36_B_mol_pr      0 --------------------------------------------------      0

gb_ADJ67256_A    351 TIVYDALYDGNHLTYYILLAIHTSACLLLLLNVVGIYKQSRRAIIFAMIS    400
                                                                       
4v36_B_mol_pr      0 --------------------------------------------------      0

gb_ADJ67256_A    401 ILLITVATFFTYASYILITWLAIIFVLLIVAFRRARRLKRPVRMRNIVAM    450
                                                                       
4v36_B_mol_pr      0 --------------------------------------------------      0

gb_ADJ67256_A    451 LLFSLFILYVNHIFIAGTLYALDIYTIEMHTSVLRYYFWLTILIIAIIIG    500
                                                                       
4v36_B_mol_pr      0 --------------------------------------------------      0

gb_ADJ67256_A    501 MIAWLFDYQFSKVRISSKIEDCEEIINQYGGNYLSHLIYSGDKQFFTNEN    550
                               .::......|..|..:.:.|||.||||.:.|||:||.:.:
4v36_B_mol_pr      1 ----------KEIGEEPDPEKLEAFLEEKGGNALSHLGFLGDKRFFYSSD     40

gb_ADJ67256_A    551 KTAFLMYRYKASSLVVLGDPLGDENAFDELLEAFYNYAEYLGYDVIFYQV    600
                     ..|.:.:......|||||||.|.|::|..:::.|.:.|:..||.|||||:
4v36_B_mol_pr     41 GNALIQFAKVGQRLVVLGDPSGREDSFPLVIKEFLHAADQKGYLVIFYQI     90

gb_ADJ67256_A    601 TDQHMPLYHNFGNQFFKLGEEAIIDLTQFSTSGKKRRGFRATLNKFDELN    650
                     ..:.|.|||:||.:|||||||||:||..|:.|||||.|.||..|:|:...
4v36_B_mol_pr     91 EREDMALYHDFGYRFFKLGEEAIVDLDTFTISGKKRAGLRAIYNRFEREG    140

gb_ADJ67256_A    651 ISFEIIEPPFSTEFINELQHVSDLWLDNRQEMHFSVGEFNEEYLSKAPIG    700
                     .:|.:.:||||.||:|||:.|||.||..::|..||:|.|.|:||.||||.
4v36_B_mol_pr    141 YTFHVEQPPFSREFLNELRQVSDEWLGRKKEKGFSLGFFQEDYLQKAPIA    190

gb_ADJ67256_A    701 VMRNEENEVIAFCSLMPTYFNDAISVDLIRWLPELDLPLMDGLYLHMLLW    750
                     |:::||.|::||.::||.|....||:||:|:..:....:||.|::::..|
4v36_B_mol_pr    191 VLKSEEGEIVAFMNIMPMYREGEISIDLMRYSKKAPKGIMDALFIYLFQW    240

gb_ADJ67256_A    751 SKEQGYTKFNMGMATLSNVGQLHYSYLRERLAGRVFEHFNGLYRFQGLRR    800
                     .||||||.||||||.|||||          ||..:|.  |..|.|.|||.
4v36_B_mol_pr    241 GKEQGYTAFNMGMAPLSNVG----------LAAVIFN--NVSYMFSGLRS    278

gb_ADJ67256_A    801 YKSKYNPNWEPRFLVYRKDNSLWESLSKVMRVIRHK    836
                     :|.||.|.|..::|.|||:.||..::..|.|:|..:
4v36_B_mol_pr    279 FKEKYKPVWRGKYLAYRKNRSLPVTMILVTRLIGRR    314


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