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# Program: needle
# Rundate: Wed 30 May 2018 11:14:16
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_ACH50230.1_ARO_3003379_Salmonella_3vvy_B/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_ACH50230.1_ARO_3003379_Salmonella_3vvy_B/gb_ACH50230.1_ARO_3003379_Salmonella_enterica_ramR_mutants__Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_ACH50230.1_ARO_3003379_Salmonella_3vvy_B/3vvy_B.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_ACH50230.1_ARO_3003379_Salmonella_3vvy_B/needle.txt
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#=======================================
#
# Aligned_sequences: 2
# 1: gb_ACH50230.1_ARO_3003379_Salmonella_enterica_ramR_mutants__Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483
# 2: 3vvy_B_mol_protein_length_194__Putative_regulatory_protein
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 193
# Identity:     184/193 (95.3%)
# Similarity:   184/193 (95.3%)
# Gaps:           9/193 ( 4.7%)
# Score: 936.0
# 
#
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gb_ACH50230.1      1 MARPKSEDKKQALLEAATQAIAQSGIAASTAVIARNAGVAEGTLFRYFAT     50
                            |||||||||||||||||||||||||||||||||||||||||||
3vvy_B_mol_pr      1 -------DKKQALLEAATQAIAQSGIAASTAVIARNAGVAEGTLFRYFAT     43

gb_ACH50230.1     51 KDELINTLYLHLKQDLCQSMIMELDRSITDAKMMTRFIWNSYISWGLNHP    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
3vvy_B_mol_pr     44 KDELINTLYLHLKQDLCQSMIMELDRSITDAKMMTRFIWNSYISWGLNHP     93

gb_ACH50230.1    101 ARHRAIRQLAVSEKLTKETEQRADDMFPELRDLCHRSVLMVFMSDEYRAF    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
3vvy_B_mol_pr     94 ARHRAIRQLAVSEKLTKETEQRADDMFPELRDLCHRSVLMVFMSDEYRAF    143

gb_ACH50230.1    151 GDGLFLALAETTMDFAARDPARAGEYIALGFEAMWRALTREEQ    193
                     |||||||||||||||||||||||||||||||||||||||||  
3vvy_B_mol_pr    144 GDGLFLALAETTMDFAARDPARAGEYIALGFEAMWRALTRE--    184


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