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# Program: needle
# Rundate: Wed 30 May 2018 11:37:18
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_ABR75897.1_ARO_3003373_Klebsiella_3bcg_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_ABR75897.1_ARO_3003373_Klebsiella_3bcg_A/gb_ABR75897.1_ARO_3003373_Klebsiella_pneumoniae_acrR_with_mutation_conferring_multidrug_antibiotic_resistance__Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_ABR75897.1_ARO_3003373_Klebsiella_3bcg_A/3bcg_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_ABR75897.1_ARO_3003373_Klebsiella_3bcg_A/needle.txt
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#=======================================
#
# Aligned_sequences: 2
# 1: gb_ABR75897.1_ARO_3003373_Klebsiella_pneumoniae_acrR_with_mutation_conferring_multidrug_antibiotic_resistance__Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578
# 2: 3bcg_A_mol_protein_length_215__HTH-type_transcriptional_regulator_acrR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 216
# Identity:     165/216 (76.4%)
# Similarity:   188/216 (87.0%)
# Gaps:           9/216 ( 4.2%)
# Score: 864.0
# 
#
#=======================================

gb_ABR75897.1      1 MARKTKQQARETRQLILDVALRLFSQQGVSSTSLATIAKAAGVTRGAIYW     50
                          ||:|:||||.|||||||||||||||||||..||||||||||||||
3bcg_A_mol_pr      1 -----KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYW     45

gb_ABR75897.1     51 HFKNKSDLFNEIWELSDASISDLEIEYRAKFPNDPLSVIREILVYVLEAT    100
                     |||:|||||:||||||:::|.:||:||:||||.|||||:||||::|||:|
3bcg_A_mol_pr     46 HFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLEST     95

gb_ABR75897.1    101 VTEERRRLMMEIIYHKCEFVGEMTVVQQAQRQLSLASYERIEQTLKECIA    150
                     ||||||||:||||:|||||||||.|||||||.|.|.||:|||||||.||.
3bcg_A_mol_pr     96 VTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIE    145

gb_ABR75897.1    151 AKLLPANLLTRRAAVLMRSYLSGLMENWLFAPDSFDLHAEARDYVAILLE    200
                     ||:|||:|:|||||::||.|:|||||||||||.||||..|||||||||||
3bcg_A_mol_pr    146 AKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAILLE    195

gb_ABR75897.1    201 MYQFCPTLRGPESLSA    216
                     ||..|||||.|.    
3bcg_A_mol_pr    196 MYLLCPTLRNPA----    207


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