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# Program: needle
# Rundate: Wed 30 May 2018 16:47:41
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AAO82600.1_ARO_3003791_Enterococcus_4gt8_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AAO82600.1_ARO_3003791_Enterococcus_4gt8_A/gb_AAO82600.1_ARO_3003791_Enterococcus_faecalis_liaS_mutant_conferring_daptomycin_resistance__Enterococcus_faecalis_V583.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AAO82600.1_ARO_3003791_Enterococcus_4gt8_A/4gt8_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AAO82600.1_ARO_3003791_Enterococcus_4gt8_A/needle.txt
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#=======================================
#
# Aligned_sequences: 2
# 1: gb_AAO82600.1_ARO_3003791_Enterococcus_faecalis_liaS_mutant_conferring_daptomycin_resistance__Enterococcus_faecalis_V583
# 2: 4gt8_A_mol_protein_length_139__Sensor_protein_vraS
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 367
# Identity:      57/367 (15.5%)
# Similarity:    88/367 (24.0%)
# Gaps:         234/367 (63.8%)
# Score: 279.5
# 
#
#=======================================

gb_AAO82600.1      1 MTDRISRRMISLYASLSTFIVILITLFSYFHSIKQNRWLLELLQRKVFYL     50
                                                                       
4gt8_A_mol_pr      0 --------------------------------------------------      0

gb_AAO82600.1     51 PLIVHIVLISLLIGLLTFLLISLVQKGQYGRIEEKLRLLANGNYESPVLN    100
                                                                       
4gt8_A_mol_pr      0 --------------------------------------------------      0

gb_AAO82600.1    101 KPTTSENQDHYLTEVEQDIWSIKNKLLEMSKELQLLNSRPQLMDGQTKEE    150
                                                                       
4gt8_A_mol_pr      0 --------------------------------------------------      0

gb_AAO82600.1    151 ILENERHRLARELHDSVSQQLFAAMMMLSALNEQAQRTETPEPYRKQLAM    200
                                                                       
4gt8_A_mol_pr      0 --------------------------------------------------      0

gb_AAO82600.1    201 VAEIINASQSEMRALLLHLRPISLEGKSLRKGIEQLLKELQTKIKIELIW    250
                                         ...|:.|||.:||:.|:.:||.|:.::::.
4gt8_A_mol_pr      1 --------------------GAMLKDKSLGEGIKDLVIDLQKKVPMKVVH     30

gb_AAO82600.1    251 DVEDVHLNSSIEDHLFRIVQELLSNTLRHAKAKELEVYLHQVDKNVLLRI    300
                     :::|..:...||||||||.||.:||||||:...::.|.|...|..:||||
4gt8_A_mol_pr     31 EIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRI     80

gb_AAO82600.1    301 VDDGVGFDMKEQSNKAGSYGLNNIRERVVGMGGTVKIISFKGQGTSVEIK    350
                     .|:|.||::.|:..:  ||||.|:|||.:.:|.|..|:|....||.:|:|
4gt8_A_mol_pr     81 QDNGKGFNVDEKLEQ--SYGLKNMRERALEIGATFHIVSLPDSGTRIEVK    128

gb_AAO82600.1    351 VPVIKEETASDQSNVSG    367
                     .|:.|            
4gt8_A_mol_pr    129 APLNK------------    133


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