########################################
# Program: needle
# Rundate: Wed 30 May 2018 13:29:23
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_85/gb_AAN62561.1_ARO_3003970_D-Ala-D-Ala_3k3p_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_AAN62561.1_ARO_3003970_D-Ala-D-Ala_3k3p_A/gb_AAN62561.1_ARO_3003970_D-Ala-D-Ala_ligase__Enterococcus_gallinarum.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_AAN62561.1_ARO_3003970_D-Ala-D-Ala_3k3p_A/3k3p_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_85/gb_AAN62561.1_ARO_3003970_D-Ala-D-Ala_3k3p_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_AAN62561.1_ARO_3003970_D-Ala-D-Ala_ligase__Enterococcus_gallinarum
# 2: 3k3p_A_mol_protein_length_383__D-alanine--D-alanine_ligase
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 353
# Identity:     164/353 (46.5%)
# Similarity:   224/353 (63.5%)
# Gaps:          38/353 (10.8%)
# Score: 787.5
# 
#
#=======================================

gb_AAN62561.1      1 -MKIILLYGGRSAEHDVSLLSAFSVVNAVYYNYYQVQLVMITRDGQWLKG     49
                      ..::|||||||||.|||:|||.||:.|:.|:.:.|:...||:.|.::|.
3k3p_A_mol_pr      1 KETLVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKT     50

gb_AAN62561.1     50 SLLTEAPTSKEVLNLTDSAYQGTPIQPGEIKEEDAIVFPLLHGPNGEDGT     99
                     ......|:.|.:.|  |:......|:|.:|.||:|:|||:||||.||||:
3k3p_A_mol_pr     51 QEFDSQPSDKLMTN--DTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGS     98

gb_AAN62561.1    100 IQGFLETIGMPYVGAGVLTSACGMDKIMTKYILQAA-GIPQVPYVPVLKN    148
                     ||||||.:.|||||..:|:|:..||||.|..:|::| .||||.||.:::.
3k3p_A_mol_pr     99 IQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQVAYVALIEG    148

gb_AAN62561.1    149 YWKENPKKVFEQCEGSLLYPMFIKPANMGSSVGITKAENREELQNALQEA    198
                        |..:....:.|..|:||:|:||||      |:|||||.:|:.|:..|
3k3p_A_mol_pr    149 ---EPLESKLAEVEEKLIYPVFVKPAN------ISKAENRTDLKQAIALA    189

gb_AAN62561.1    199 YRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAFYDYNSKYL    248
                     .:||:|.::|||::||||||.:|||.||:||:|||||             
3k3p_A_mol_pr    190 LKYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEIV-------------    226

gb_AAN62561.1    249 DNKIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLTNKNELF    298
                         .|.|||:|......|.:::|..|:..||..||||||||||...:::
3k3p_A_mol_pr    227 ----TMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTEDGKVY    272

gb_AAN62561.1    299 LNELNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQLGVNRFKQRQAFLT    348
                     |||||||||||  ||||||||..||.|..|||||:.|....|.:|::   
3k3p_A_mol_pr    273 LNELNTMPGFT--SMYPLLWENMGLSYSVLIEELVSLAKEMFDKRES---    317

gb_AAN62561.1    349 DVE    351
                        
3k3p_A_mol_pr    317 ---    317


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