######################################## # Program: needle # Rundate: Wed 30 May 2018 15:18:03 # Commandline: needle # -outfile /Users/teresatavella/Documents/models_new/seqid30_85/gb_AAL97684.1_ARO_3003387_Streptococcus_3h23_B/needle.txt # -asequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_AAL97684.1_ARO_3003387_Streptococcus_3h23_B/gb_AAL97684.1_ARO_3003387_Streptococcus_pyogenes_folP_with_mutation_conferring_resistance_to_sulfonamides__Streptococcus_pyogenes_MGAS8232.fa # -bsequence /Users/teresatavella/Documents/models_new/seqid30_85/gb_AAL97684.1_ARO_3003387_Streptococcus_3h23_B/3h23_B.fa # -gapopen 10 # -gapextend 0.5 # Align_format: srspair # Report_file: /Users/teresatavella/Documents/models_new/seqid30_85/gb_AAL97684.1_ARO_3003387_Streptococcus_3h23_B/needle.txt ######################################## #======================================= # # Aligned_sequences: 2 # 1: gb_AAL97684.1_ARO_3003387_Streptococcus_pyogenes_folP_with_mutation_conferring_resistance_to_sulfonamides__Streptococcus_pyogenes_MGAS8232 # 2: 3h23_B_mol_protein_length_297__Dihydropteroate_synthase # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 275 # Identity: 116/275 (42.2%) # Similarity: 164/275 (59.6%) # Gaps: 21/275 ( 7.6%) # Score: 540.0 # # #======================================= gb_AAL97684.1 1 -----MKIGRFVIEGN--AAIMGILNVTPDSFSDGGSYTTVQKALDHVEQ 43 ::.|.:.:..| ..|||||||||| ||||||..|..|:.|.:: 3h23_B_mol_pr 1 KWDYDLRCGEYTLNLNEKTLIMGILNVTPD--SDGGSYNEVDAAVRHAKE 48 gb_AAL97684.1 44 MIADGAKIIDVGGESTRPGCQFVSATDEIDRVVPVIKAIKENYDILISID 93 |..:||.|||:||| ||..:||.||||:|:|:.:...:.|||| 3h23_B_mol_pr 49 MRDEGAHIIDIGGE--------VSVEEEIKRVVPMIQAVSKEVKLPISID 90 gb_AAL97684.1 94 TYKTETARAALEAGADILNDVWAGLYDGQMFALAAEYDAPIILMHNQDEE 143 |||.|.|:.|:||||.|:||:|....:.::..:||.||.|||||||:|.. 3h23_B_mol_pr 91 TYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNM 140 gb_AAL97684.1 144 VYQEVTQDVCDFLGNRAQAALDAGVPKNNIWIDPGFGFAKSVQQNTELLK 193 .|:.:..|:...|.:..:.|.||||...||.:|||.||||:.:||.|.:: 3h23_B_mol_pr 141 NYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMR 190 gb_AAL97684.1 194 GLDRVCQLGYPVLFGISRKRVVDALLGGNTKAKERDGATAALSAYALGKG 243 .|:::..||||||.|.|||..:..:| :...:||...|.|.....:.|| 3h23_B_mol_pr 191 NLEQLNVLGYPVLLGTSRKSFIGHVL--DLPVEERLEGTGATVCLGIEKG 238 gb_AAL97684.1 244 CQIVRVHDVKANQDIVAVLSQLM-- 266 |:.|||||||....:..::..:: 3h23_B_mol_pr 239 CEFVRVHDVKEMSRMAKMMDAMIGK 263 #--------------------------------------- #---------------------------------------