########################################
# Program: needle
# Rundate: Wed 30 May 2018 13:11:03
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_low90/gb_AAL82403.1_ARO_3003297_Bartonella_2y3p_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_AAL82403.1_ARO_3003297_Bartonella_2y3p_A/gb_AAL82403.1_ARO_3003297_Bartonella_bacilliformis_gyrA_conferring_resistance_to_fluoroquinolones__Bartonella_bacilliformis.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_low90/gb_AAL82403.1_ARO_3003297_Bartonella_2y3p_A/2y3p_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_low90/gb_AAL82403.1_ARO_3003297_Bartonella_2y3p_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_AAL82403.1_ARO_3003297_Bartonella_bacilliformis_gyrA_conferring_resistance_to_fluoroquinolones__Bartonella_bacilliformis
# 2: 2y3p_A_mol_protein_length_522__DNA_GYRASE_SUBUNIT_A
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 933
# Identity:     293/933 (31.4%)
# Similarity:   374/933 (40.1%)
# Gaps:         442/933 (47.4%)
# Score: 1487.5
# 
#
#=======================================

gb_AAL82403.1      1 MTDLTRLPEHDVSTGIEPVSIIEEMQCSYLDYAMSVIVSRALPDVRDGLK     50
                                                   ||||||||.|||||||||||
2y3p_A_mol_pr      1 ------------------------------DYAMSVIVGRALPDVRDGLK     20

gb_AAL82403.1     51 PVHRRILHAMNEMGLLFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRM    100
                     |||||:|:|||.:|..:||.|:|||.|||:|:||:|||||:::||.:|||
2y3p_A_mol_pr     21 PVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRM     70

gb_AAL82403.1    101 AQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECRLEKVAEELLADIDKDT    150
                     ||.||||..|:||||||||:|||..|||||||.||.|:|.||:||::|:|
2y3p_A_mol_pr     71 AQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKET    120

gb_AAL82403.1    151 VDFQDNYDGREHEPIVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVID    200
                     |||.|||||.|..|.|:|.:.||||||||.|||||||||||||||.|||:
2y3p_A_mol_pr    121 VDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN    170

gb_AAL82403.1    201 GCVALIDNPNITIDEMLAIIPGPDFPTGGIILGHSGVRSAYETGRGSIIM    250
                     ||:|.||:.:|:|:.::..||||||||..||.|..|:..||.||||.:.:
2y3p_A_mol_pr    171 GCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYI    220

gb_AAL82403.1    251 RAKVEIE-EIRNQRQAIIVSEIPYQVNKATMVEKMAELVRDKRIEGISDL    299
                     ||:.|:| :.:..|:.|||.|||||||||.::||:||||::||:||||.|
2y3p_A_mol_pr    221 RARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISAL    270

gb_AAL82403.1    300 RDESDRDGYRVVIELKREAVADVVLNQLYRYTPLQASFGCNMVALNGGKP    349
                     |||||:||.|:|||:||:||.:||||.||..|.||.|||.|||||:.|:|
2y3p_A_mol_pr    271 RDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQP    320

gb_AAL82403.1    350 EQMTLLDMLRAFVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDE    399
                     :.|.|.|::.|||..|.|||:|||.:.|||||:|||:|..||:|:||||.
2y3p_A_mol_pr    321 KIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDP    370

gb_AAL82403.1    400 IIELIRKAHDPQTARTQLMERRWPASEVAALIKLIDDPRHIIHE----DN    445
                     ||||||.|..|..|:|.|:...|....|||:::....|..:..|    |.
2y3p_A_mol_pr    371 IIELIRHAPTPAEAKTALVANPWQLGNVAAMLEDAARPEWLEPEFGVRDG    420

gb_AAL82403.1    446 TYNLSEEQARAILELRLQRLTALGRNEIADELNAIGEDIADYLGILASRS    495
                     .|.|:|:||:|||:||||:||.|...::.||...:.:.||:.|.||.|..
2y3p_A_mol_pr    421 LYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSAD    470

gb_AAL82403.1    496 RIMDIVKSELSALRETFATPRRTVFGFGSAEMDCEDLIVPEDMVVTVSHS    545
                     |:|::::.||..:||.|...|||...                        
2y3p_A_mol_pr    471 RLMEVIREELELVREQFGDKRRTEIT------------------------    496

gb_AAL82403.1    546 GYIKRVPLNTYRAQRRGGKGRSGMATKDQDFVTRLFVANTHTPVLFFSSR    595
                                                                       
2y3p_A_mol_pr    496 --------------------------------------------------    496

gb_AAL82403.1    596 GIVYKEKVWRLPVGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWGK    645
                                                                       
2y3p_A_mol_pr    496 --------------------------------------------------    496

gb_AAL82403.1    646 LDIMFATTRGTVRRNKLSDFIQVNRNGKIAMKLDEEGDEILSVETCTEHD    695
                                                                       
2y3p_A_mol_pr    496 --------------------------------------------------    496

gb_AAL82403.1    696 DVVLITANGQCIRFPVTDIRVFSGRNSMGVRGINMVEGDKVISMTILEHV    745
                                                                       
2y3p_A_mol_pr    496 --------------------------------------------------    496

gb_AAL82403.1    746 EATSVERSAYIKRAINERRVAGSDDEDILTVDEDGEETEVELTDERYAEL    795
                                                                       
2y3p_A_mol_pr    496 --------------------------------------------------    496

gb_AAL82403.1    796 SAHEQMLLTVSEFGYGKRSSSYDFRISGRGGKGIRATDLSKAAEIGKLVA    845
                                                                       
2y3p_A_mol_pr    496 --------------------------------------------------    496

gb_AAL82403.1    846 AFPVGERDQIMLVSDGGQLIRVPVNCIRIAGRSTKGVTVFNTAKGEKVVS    895
                                                                       
2y3p_A_mol_pr    496 --------------------------------------------------    496

gb_AAL82403.1    896 VERISESENDTNQLDIESEEHSGTVSMSEEKKL    928
                                                      
2y3p_A_mol_pr    496 ---------------------------------    496


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