########################################
# Program: needle
# Rundate: Wed 30 May 2018 16:52:23
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AAK48336.1_ARO_3003458_Mycobacterium_4aox_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AAK48336.1_ARO_3003458_Mycobacterium_4aox_A/gb_AAK48336.1_ARO_3003458_Mycobacterium_tuberculosis_ethA_with_mutation_conferring_resistance_to_ethionamide__Mycobacterium_tuberculosis_CDC1551.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AAK48336.1_ARO_3003458_Mycobacterium_4aox_A/4aox_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AAK48336.1_ARO_3003458_Mycobacterium_4aox_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_AAK48336.1_ARO_3003458_Mycobacterium_tuberculosis_ethA_with_mutation_conferring_resistance_to_ethionamide__Mycobacterium_tuberculosis_CDC1551
# 2: 4aox_A_mol_protein_length_549__STEROID_MONOOXYGENASE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 577
# Identity:     137/577 (23.7%)
# Similarity:   213/577 (36.9%)
# Gaps:         142/577 (24.6%)
# Score: 312.5
# 
#
#=======================================

gb_AAK48336.1      1 MTEHLDVVIVGAGISGVSAAWHLQDRCPTKSYAILEKRESMGGTWDLFRY     50
                      |...|||:|||||:|:.|....:.:..|  ....|....:||.|...||
4aox_A_mol_pr      1 -TTSYDVVVVGAGIAGLYAIHRFRSQGLT--VRAFEAASGVGGVWYWNRY     47

gb_AAK48336.1     51 PGIRSDSDMYTLGFRFRP-----WTGRQAIADGKPILEYVKSTAAMYGID     95
                     ||.|.|.:.....:.|.|     |...:..|....||.|::..|..:.:.
4aox_A_mol_pr     48 PGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLR     97

gb_AAK48336.1     96 RHIRFHHKVISADWSTAENRWTVHIQSHGTLSALTCEFLFLCSGYYNYDE    145
                     |.|||..:|.||.......||||.......:||   .||.:.:|  ....
4aox_A_mol_pr     98 RDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSA---RFLVVAAG--PLSN    142

gb_AAK48336.1    146 GYSPRFAGSEDFVGPIIHPQHWPED-LDYDAKNIVVIGSGATAVTLVPAL    194
                     ..:|.|.|.:.|.|.|:|...||.| :|:..|.:.|||:|::.:..:|.:
4aox_A_mol_pr    143 ANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPII    192

gb_AAK48336.1    195 ADSGAKHVTMLQRSPTYI-----VSQPDRDGIAEKLN-----RWLPETMA    234
                     |:. |:.:.:.|||..|.     |...|.....:|.|     |...|:..
4aox_A_mol_pr    193 AEQ-AEQLFVFQRSANYSIPAGNVPLDDATRAEQKANYAERRRLSRESGG    241

gb_AAK48336.1    235 YTAVR--WKNVL-----RQAAVYSACQKWPRRMRKMFLSLIQRQL--PEG    275
                     .:..|  .|:.|     .:.|||.  ::| :....:|......||  |..
4aox_A_mol_pr    242 GSPHRPHPKSALEVSEEERRAVYE--ERW-KLGGVLFSKAFPDQLTDPAA    288

gb_AAK48336.1    276 YDVRKHFGPHYNPWDQRLCLVPN----GDLFRAIRH--GKVEVVTDT---    316
                     .|..:.|      |::::..|.:    .:|.....|  |...:|||:   
4aox_A_mol_pr    289 NDTARAF------WEEKIRAVVDDPAVAELLTPKDHAIGAKRIVTDSGYY    332

gb_AAK48336.1    317 -----------------IERFTATGIRLNSGRELPADIIITATGLNLQLF    349
                                      |.....||| :.:|.....|:|:.|||     |
4aox_A_mol_pr    333 ETYNRDNVELVDLRSTPIVGMDETGI-VTTGAHYDLDMIVLATG-----F    376

gb_AAK48336.1    350 GGATATIDGQQV------DITTTMA-----YKGMMLSGIPNMAYTVGYTN    388
                     ...|.::|..::      .:..|.|     |.|:.:.|.||.....|..:
4aox_A_mol_pr    377 DAMTGSLDKLEIVGRGGRTLKETWAAGPRTYLGLGIDGFPNFFNLTGPGS    426

gb_AAK48336.1    389 ----ASWTLKADLVSEFVCRLLNYMDDNGFDTV--VVERPGSDVEE----    428
                         |:..|.::|..::|...:.|:|..|...:  ..|.....|||    
4aox_A_mol_pr    427 PSVLANMVLHSELHVDWVADAIAYLDARGAAGIEGTPEAVADWVEECRNR    476

gb_AAK48336.1    429 --------------RPFMEFTPGY-VLRS-LDELPKQGSRTPWRLNQNYL    462
                                   ..||.|..|: |.|. :.|:.:.|.:....|..   
4aox_A_mol_pr    477 AEASLLNSANSWYLGVFMPFLGGFGVYREIITEVAESGYKGFAILEG---    523

gb_AAK48336.1    463 RDIRLIRRGKIDDEGLRFAKRPAPVGV    489
                                                
4aox_A_mol_pr    523 ---------------------------    523


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