########################################
# Program: needle
# Rundate: Wed 30 May 2018 16:56:18
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AAK48268.1_ARO_3003465_Mycobacterium_3pty_A/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AAK48268.1_ARO_3003465_Mycobacterium_3pty_A/gb_AAK48268.1_ARO_3003465_Mycobacterium_tuberculosis_embB_mutants_conferring_resistance_to_rifampicin__Mycobacterium_tuberculosis_CDC1551.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AAK48268.1_ARO_3003465_Mycobacterium_3pty_A/3pty_A.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid30_low85/gb_AAK48268.1_ARO_3003465_Mycobacterium_3pty_A/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_AAK48268.1_ARO_3003465_Mycobacterium_tuberculosis_embB_mutants_conferring_resistance_to_rifampicin__Mycobacterium_tuberculosis_CDC1551
# 2: 3pty_A_mol_protein_length_406__Arabinosyltransferase_C
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1102
# Identity:     139/1102 (12.6%)
# Similarity:   178/1102 (16.2%)
# Gaps:         822/1102 (74.6%)
# Score: 592.5
# 
#
#=======================================

gb_AAK48268.1      1 MTQCASRRKSTPNRAILGAFASARGTRWVATIAGLIGFVLSVATPLLPVV     50
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

gb_AAK48268.1     51 QTTAMLDWPQRGQLGSVTAPLISLTPVDFTATVPCDVVRAMPPAGGVVLG    100
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

gb_AAK48268.1    101 TAPKQGKDANLQALFVVVSAQRVDVTDRNVVILSVPREQVTSPQCQRIEV    150
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

gb_AAK48268.1    151 TSTHAGTFANFVGLKDPSGAPLRSGFPDPNLRPQIVGVFTDLTGPAPPGL    200
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

gb_AAK48268.1    201 AVSATIDTRFSTRPTTLKLLAIIGAIVATVVALIALWRLDQLDGRGSIAQ    250
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

gb_AAK48268.1    251 LLLRPFRPASSPGGMRRLIPASWRTFTLTDAVVIFGFLLWHVIGANSSDD    300
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

gb_AAK48268.1    301 GYILGMARVADHAGYMSNYFRWFGSPEDPFGWYYNLLALMTHVSDASLWM    350
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

gb_AAK48268.1    351 RLPDLAAGLVCWLLLSREVLPRLGPAVEASKPAYWAAAMVLLTAWMPFNN    400
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

gb_AAK48268.1    401 GLRPEGIIALGSLVTYVLIERSMRYSRLTPAALAVVTAAFTLGVQPTGLI    450
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

gb_AAK48268.1    451 AVAALVAGGRPMLRILVRRHRLVGTLPLVSPMLAAGTVILTVVFADQTLS    500
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

gb_AAK48268.1    501 TVLEATRVRAKIGPSQAWYTENLRYYYLILPTVDGSLSRRFGFLITALCL    550
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

gb_AAK48268.1    551 FTAVFIMLRRKRIPSVARGPAWRLMGVIFGTMFFLMFTPTKWVHHFGLFA    600
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

gb_AAK48268.1    601 AVGAAMAALTTVLVSPSVLRWSRNRMAFLAALFFLLALCWATTNGWWYVS    650
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

gb_AAK48268.1    651 SYGVPFNSAMPKIDGITVSTIFFALFAIAAGYAAWLHFAPRGAGEGRLIR    700
                                                                       
3pty_A_mol_pr      0 --------------------------------------------------      0

gb_AAK48268.1    701 ALTTAPVPIVAGFMAAVFVASMVAGIVRQYPTYSNGWSNVRAFVG-GCGL    749
                                                      |.|.||::|..| .|||
3pty_A_mol_pr      1 ---------------------------------SVGRSNLQALAGKTCGL     17

gb_AAK48268.1    750 ADDVLVEPDTNAGFMKPLDGDSGSWGPLG-PLGGVNPVGFTPNGVPEHTV    798
                     |:|||||.|.|||.:.|:.      .||. .||......|||||:|... 
3pty_A_mol_pr     18 AEDVLVELDPNAGMLAPVT------APLADALGAGLSEAFTPNGIPADV-     60

gb_AAK48268.1    799 AEAIVMKPNQPGTDYDWDAPTKLTSPGINGSTVPLPYGLDPARVPLAGTY    848
                                ||         ..:||||||...|||.|||||.|:.|::
3pty_A_mol_pr     61 -----------GT---------TAAPGINGSRARLPYNLDPARTPVLGSW     90

gb_AAK48268.1    849 TTGAQQQSTLVSAWYLLPKPD--DGHPLVVVTAAGKIAGNSVLHGYTPGQ    896
                     ..|.|..:.|.|.||.||..:  |..||:||||||:.          ..:
3pty_A_mol_pr     91 RAGVQVPAMLRSGWYRLPTNEQRDRAPLLVVTAAGRF----------DSR    130

gb_AAK48268.1    897 TVVLEYAMPGPGALVPAGRMVPDDLYGEQPKAWRNLRFARAKMPADAVAV    946
                     .|.|::|.....|....|..:.....|..| ||||||...:.:|:.|..|
3pty_A_mol_pr    131 EVRLQWATDEQAAAGHHGGSMEFADVGAAP-AWRNLRAPLSAIPSTATQV    179

gb_AAK48268.1    947 RVVAEDLSLTPEDWIAVTPPRVPDLRSLQEYVGSTQPVLLDWAVGLAFPC    996
                     |:||:|..|.|:.|||:||||:|.:|:||..||:..||.|||.|||||||
3pty_A_mol_pr    180 RLVADDQDLAPQHWIALTPPRIPRVRTLQNVVGAADPVFLDWLVGLAFPC    229

gb_AAK48268.1    997 QQPMLHANGIAEIPKFRITPDYSAKKLDTDTWEDGTNGGLLGITDLLLRA   1046
                     |:|..|..|:.|.||:||.||                    .||:||:||
3pty_A_mol_pr    230 QRPFGHQYGVDETPKWRILPD--------------------RITELLMRA    259

gb_AAK48268.1   1047 HVMATYLSRDWARDWGSLRKFDTLVDAPPAQLELGTATRSGLWSPGKIRI   1096
                     ..:|:||..||.||||:|::.....                         
3pty_A_mol_pr    260 TTVASYLKDDWFRDWGALQRLTPYY-------------------------    284

gb_AAK48268.1   1097 GP   1098
                       
3pty_A_mol_pr    284 --    284


#---------------------------------------
#---------------------------------------