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# Program: needle
# Rundate: Wed 30 May 2018 11:59:40
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_AAK44936.1_ARO_3003395_Mycobacterium_1vy5_AL/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_AAK44936.1_ARO_3003395_Mycobacterium_1vy5_AL/gb_AAK44936.1_ARO_3003395_Mycobacterium_tuberculosis_rpsL_mutations_conferring_resistance_to_Streptomycin__Mycobacterium_tuberculosis_CDC1551.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_AAK44936.1_ARO_3003395_Mycobacterium_1vy5_AL/1vy5_L.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_AAK44936.1_ARO_3003395_Mycobacterium_1vy5_AL/needle.txt
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#=======================================
#
# Aligned_sequences: 2
# 1: gb_AAK44936.1_ARO_3003395_Mycobacterium_tuberculosis_rpsL_mutations_conferring_resistance_to_Streptomycin__Mycobacterium_tuberculosis_CDC1551
# 2: 1vy5_L_mol_protein_length_132__30S_ribosomal_protein_S12
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 124
# Identity:      90/124 (72.6%)
# Similarity:   100/124 (80.6%)
# Gaps:           2/124 ( 1.6%)
# Score: 456.0
# 
#
#=======================================

gb_AAK44936.1      1 MPTIQQLVRKGRRDKISKVKTAALKGSPQRRGVCTRVYTTTPKKPNSALR     50
                      |||.|||||||.....|.|..||||:|.||||||.|.|.||||||||||
1vy5_L_mol_pr      1 -PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALR     49

gb_AAK44936.1     51 KVARVKLTSQVEVTAYIPGEGHNLQEHSMVLVRGGRVKDLPGVRYKIIRG    100
                     |||:|:|||..|||||||||||||||||:||:|||||||||||||.|:||
1vy5_L_mol_pr     50 KVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRG     99

gb_AAK44936.1    101 SLDTQGVKNRKQARSRYGAKKEKG    124
                     ..|..|||:||::||:||.||.| 
1vy5_L_mol_pr    100 VYDAAGVKDRKKSRSKYGTKKPK-    122


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