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# Program: needle
# Rundate: Wed 30 May 2018 12:36:06
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_AAK11270.1_ARO_3003385_Enterobacter_5fvn_D/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_AAK11270.1_ARO_3003385_Enterobacter_5fvn_D/gb_AAK11270.1_ARO_3003385_Enterobacter_aerogenes_omp36_with_mutation__Enterobacter_aerogenes.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_AAK11270.1_ARO_3003385_Enterobacter_5fvn_D/5fvn_D.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_AAK11270.1_ARO_3003385_Enterobacter_5fvn_D/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_AAK11270.1_ARO_3003385_Enterobacter_aerogenes_omp36_with_mutation__Enterobacter_aerogenes
# 2: 5fvn_D_mol_protein_length_342__OMPC_PORIN
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 376
# Identity:     278/376 (73.9%)
# Similarity:   308/376 (81.9%)
# Gaps:          35/376 ( 9.3%)
# Score: 1498.5
# 
#
#=======================================

gb_AAK11270.1      1 MKVKVLSLLVPALLVAGAANAAEIYNKDGNKLDLYGKIDGLHYFSSDDSV     50
                                          ||||||||||||||||:|||||||.|||.
5fvn_D_mol_pr      1 ---------------------AEIYNKDGNKLDLYGKVDGLHYFSDDDSQ     29

gb_AAK11270.1     51 DGDQTYMRIGVKGETQINDQLTGYGQWEYNVQANNTESSSDQAWTRLAFA    100
                     ||||||||:|.|||||:||||||||||||.:|.|:.|:.:: :|||:|||
5fvn_D_mol_pr     30 DGDQTYMRLGFKGETQVNDQLTGYGQWEYQIQGNSGENENN-SWTRVAFA     78

gb_AAK11270.1    101 GLKFGDAGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFLQSRANGV    150
                     ||||||||||||||||||||||||||||||||||||||||||:|.|.||.
5fvn_D_mol_pr     79 GLKFGDAGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGF    128

gb_AAK11270.1    151 ATYRNSDFFGLVDGLNFALQYQGKNGSVSGEDQTNNGRDFQKQNGEGFGT    200
                     ||||||||||||||||||:||||||||.||||||||||...:|||:|.|.
5fvn_D_mol_pr    129 ATYRNSDFFGLVDGLNFAVQYQGKNGSASGEDQTNNGRTELRQNGDGVGG    178

gb_AAK11270.1    201 SVTYDIWDGISAGFAYSSSKRTDEQNNSTFVSKTDGGRYGVLGEGDHAET    250
                     |:||::.:|...|.|.||||||..||:.|:            |.||.|||
5fvn_D_mol_pr    179 SITYNLGEGFGIGTAVSSSKRTSSQNDLTY------------GNGDRAET    216

gb_AAK11270.1    251 YTGGLKYDANNIYLATQYTQTYNATRTGNIGFANKAQNFEVVAQYQFDFG    300
                     |||||||||||||||.||||||||||.||:|:||||||||||||||||||
5fvn_D_mol_pr    217 YTGGLKYDANNIYLAAQYTQTYNATRVGNLGWANKAQNFEVVAQYQFDFG    266

gb_AAK11270.1    301 LRPSVAYLQSKGKDM-GRYGDQDILKYVDLGATYYFNKNMSTYVDYKINL    349
                     ||||||||||||||: ..|||||:|||||:||||||||||||||||||||
5fvn_D_mol_pr    267 LRPSVAYLQSKGKDLENGYGDQDLLKYVDVGATYYFNKNMSTYVDYKINL    316

gb_AAK11270.1    350 LDDNKFTKDASISTDNVVALGLVYQF    375
                     |||.:||::|.||||::|||||||||
5fvn_D_mol_pr    317 LDDKEFTRNAGISTDDIVALGLVYQF    342


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