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# Program: needle
# Rundate: Wed 30 May 2018 12:11:10
# Commandline: needle
#    -outfile /Users/teresatavella/Documents/models_new/seqid60_90/gb_AAB57788.1_ARO_3000464_Neisseria_3vy8_X/needle.txt
#    -asequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_AAB57788.1_ARO_3000464_Neisseria_3vy8_X/gb_AAB57788.1_ARO_3000464_Neisseria_gonorrhoeae_mutant_porin_PIB_por_with_reduced_permeability_to_antibiotic__Neisseria_gonorrhoeae.fa
#    -bsequence /Users/teresatavella/Documents/models_new/seqid60_90/gb_AAB57788.1_ARO_3000464_Neisseria_3vy8_X/3vy8_X.fa
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: /Users/teresatavella/Documents/models_new/seqid60_90/gb_AAB57788.1_ARO_3000464_Neisseria_3vy8_X/needle.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: gb_AAB57788.1_ARO_3000464_Neisseria_gonorrhoeae_mutant_porin_PIB_por_with_reduced_permeability_to_antibiotic__Neisseria_gonorrhoeae
# 2: 3vy8_X_mol_protein_length_355__Outer_membrane_protein
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 362
# Identity:     207/362 (57.2%)
# Similarity:   248/362 (68.5%)
# Gaps:          35/362 ( 9.7%)
# Score: 1002.0
# 
#
#=======================================

gb_AAB57788.1      1 MKKSLIALTLAALPVAATADVTLYGAIKAGVQTYR--SVEHTKGKVSKVE     48
                                        .|||||.|||||:..|  .....|.:..|.:
3vy8_X_mol_pr      1 -------------------QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSK     31

gb_AAB57788.1     49 TGSEIADFGSKIGFKGQEDLGNGLKAVWQLEQGASVAGTNTGWGNKQSFV     98
                     |.::|||||||||||||||||||:||:|||||.||:||||:||||:|||:
3vy8_X_mol_pr     32 TATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFI     81

gb_AAB57788.1     99 GLKGGFGTIRAGSLNSPLKNTGANVNAWESGKFTGNVLEISGMAQREHRY    148
                     ||||||||:|||:||:.||::|.||||||||..|.:||.:..:.:.|.|.
3vy8_X_mol_pr     82 GLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESRE    131

gb_AAB57788.1    149 LSVRYDSPEFAGFSGSVQYAPKDNSG---------SNGESYHVGLNYRNN    189
                     :|||||||.||||||||||.|:||:.         |:.||||.||.|.|.
3vy8_X_mol_pr    132 ISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENA    181

gb_AAB57788.1    190 GFFAQYAGLFQRYGEGTKKIEYEHQVYSIPSLFVEKLQVHRLVGGYDNNA    239
                     |||.||||.|.:|.:.....| ...|.:..:..|:..||||:|.|||.|.
3vy8_X_mol_pr    182 GFFGQYAGSFAKYADLNTDAE-RVAVNTANAHPVKDYQVHRVVAGYDAND    230

gb_AAB57788.1    240 LYVSVAAQQQDAK--LYGARRANSHNSQTEVAATAAYRFGNVTPRVSYAH    287
                     ||||||.|.:.||  ..|:.:...| .||:||||||||||||||||||||
3vy8_X_mol_pr    231 LYVSVAGQYEAAKNNEVGSIKGKKH-EQTQVAATAAYRFGNVTPRVSYAH    279

gb_AAB57788.1    288 GFKGTVDSA-DHDNTYDQVVVGAEYDFSKRTSALVSAGWLQEGKGADKIV    336
                     |||..|:.. |.:..||||:|||:||||||||||||||||::||||.|:.
3vy8_X_mol_pr    280 GFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVE    329

gb_AAB57788.1    337 STASAVVLRHKF    348
                     .|||.|.|||||
3vy8_X_mol_pr    330 QTASMVGLRHKF    341


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